Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W68_RS06335 Genome accession   NZ_CP027445
Coordinates   1099766..1100395 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-3492     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094766..1105395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W68_RS06320 helD 1095008..1097062 (-) 2055 WP_032206206.1 DNA helicase IV -
  C6W68_RS06325 yccF 1097185..1097631 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C6W68_RS06330 yccS 1097641..1099803 (+) 2163 WP_074433556.1 YccS family putative transporter -
  C6W68_RS06335 sxy/tfoX 1099766..1100395 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W68_RS06340 sulA 1100614..1101123 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6W68_RS06350 ompA 1101480..1102520 (+) 1041 WP_000750416.1 porin OmpA -
  C6W68_RS06355 matP 1102596..1103048 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6W68_RS06360 ycbZ 1103234..1104994 (+) 1761 WP_032206208.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277246 C6W68_RS06335 WP_000839153.1 1099766..1100395(-) (sxy/tfoX) [Escherichia coli strain 2013C-3492]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277246 C6W68_RS06335 WP_000839153.1 1099766..1100395(-) (sxy/tfoX) [Escherichia coli strain 2013C-3492]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment