Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MJ69_RS29455 Genome accession   NZ_CP027442
Coordinates   5421056..5421685 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C-3252     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5416056..5426685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ69_RS29430 ycbZ 5416458..5418218 (-) 1761 WP_000156528.1 Lon protease family protein -
  MJ69_RS29435 matP 5418404..5418856 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MJ69_RS29440 ompA 5418931..5419971 (-) 1041 WP_000750416.1 porin OmpA -
  MJ69_RS29450 sulA 5420328..5420837 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MJ69_RS29455 sxy/tfoX 5421056..5421685 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MJ69_RS29460 yccS 5421648..5423810 (-) 2163 WP_000875023.1 YccS family putative transporter -
  MJ69_RS29465 yccF 5423820..5424266 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MJ69_RS29470 helD 5424389..5426443 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=277245 MJ69_RS29455 WP_000839153.1 5421056..5421685(+) (sxy/tfoX) [Escherichia coli strain 2013C-3252]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=277245 MJ69_RS29455 WP_000839153.1 5421056..5421685(+) (sxy/tfoX) [Escherichia coli strain 2013C-3252]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment