Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CEP88_RS02790 | Genome accession | NZ_CP027407 |
| Coordinates | 485034..485534 (-) | Length | 166 a.a. |
| NCBI ID | WP_011568746.1 | Uniprot ID | Q166G4 |
| Organism | Roseobacter denitrificans strain FDAARGOS_309 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 480034..490534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP88_RS02760 (CEP88_02775) | glnA | 480402..481805 (-) | 1404 | WP_011568743.1 | type I glutamate--ammonia ligase | - |
| CEP88_RS02765 (CEP88_02780) | - | 481854..482192 (-) | 339 | WP_011568744.1 | P-II family nitrogen regulator | - |
| CEP88_RS02770 (CEP88_02785) | - | 482363..483046 (+) | 684 | WP_044033113.1 | NAD(P)H-hydrate epimerase | - |
| CEP88_RS02775 (CEP88_02790) | - | 483088..483945 (+) | 858 | WP_044033114.1 | NAD(P)H-hydrate dehydratase | - |
| CEP88_RS02780 (CEP88_02795) | - | 484034..484564 (-) | 531 | WP_011568745.1 | Hint domain-containing protein | - |
| CEP88_RS02790 (CEP88_02805) | ssb | 485034..485534 (-) | 501 | WP_011568746.1 | single-stranded DNA-binding protein | Machinery gene |
| CEP88_RS02795 (CEP88_02810) | - | 485756..486340 (+) | 585 | WP_011568747.1 | lytic transglycosylase domain-containing protein | - |
| CEP88_RS02800 (CEP88_02815) | - | 486409..488499 (-) | 2091 | WP_011568748.1 | ABC transporter ATP-binding protein | - |
| CEP88_RS02805 (CEP88_02820) | - | 488584..489801 (-) | 1218 | WP_011568749.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 17937.65 Da Isoelectric Point: 5.3255
>NTDB_id=276945 CEP88_RS02790 WP_011568746.1 485034..485534(-) (ssb) [Roseobacter denitrificans strain FDAARGOS_309]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSGGGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDL
DDEIPF
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSGGGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDL
DDEIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=276945 CEP88_RS02790 WP_011568746.1 485034..485534(-) (ssb) [Roseobacter denitrificans strain FDAARGOS_309]
ATGGCCGGCTCTGTAAACAAAGTAATCCTTATCGGCAATCTGGGGCGTGACCCTGAGGTCCGCAGCTTTCAGAACGGCGG
CAAAGTGTGCAACCTGCGGATTGCCACCTCCGAAACGTGGAAAGACCGCAACACCGGCGAGCGTAAGGAACGTACCGAGT
GGCATTCGGTGGCCATTTTCTCTGAACCCCTTGCGCGCGTGGCCGAACAGTATCTGCGCAAGGGCTCCAAAGTGTACCTT
GAGGGGCAGCTGGAGACGCGCAAGTGGCAGGATCAATCCGGGCAGGATCGCTATTCCACCGAAGTTGTGCTGCGGCCGTA
CTCGTCCACGCTGACCATGCTTGACGGTCGCGACTCCGGCGGGGGTGGCGGGAACTACGGAGGCGGCGGCGGTGGTGGCC
AGATGGGTTATGACGACCGTGGCGGCGACAGTTACGGTGGCGGTGGAAACGCGCCAAGCCCGGCACCTTCGCGCGATCTG
GATGATGAAATTCCGTTCTGA
ATGGCCGGCTCTGTAAACAAAGTAATCCTTATCGGCAATCTGGGGCGTGACCCTGAGGTCCGCAGCTTTCAGAACGGCGG
CAAAGTGTGCAACCTGCGGATTGCCACCTCCGAAACGTGGAAAGACCGCAACACCGGCGAGCGTAAGGAACGTACCGAGT
GGCATTCGGTGGCCATTTTCTCTGAACCCCTTGCGCGCGTGGCCGAACAGTATCTGCGCAAGGGCTCCAAAGTGTACCTT
GAGGGGCAGCTGGAGACGCGCAAGTGGCAGGATCAATCCGGGCAGGATCGCTATTCCACCGAAGTTGTGCTGCGGCCGTA
CTCGTCCACGCTGACCATGCTTGACGGTCGCGACTCCGGCGGGGGTGGCGGGAACTACGGAGGCGGCGGCGGTGGTGGCC
AGATGGGTTATGACGACCGTGGCGGCGACAGTTACGGTGGCGGTGGAAACGCGCCAAGCCCGGCACCTTCGCGCGATCTG
GATGATGAAATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50.538 |
100 |
0.566 |
| ssb | Vibrio cholerae strain A1552 |
53.179 |
100 |
0.554 |
| ssb | Neisseria meningitidis MC58 |
44.693 |
100 |
0.482 |
| ssb | Neisseria gonorrhoeae MS11 |
44.693 |
100 |
0.482 |