Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CFK78_RS04495 Genome accession   NZ_CP032633
Coordinates   922004..924007 (+) Length   667 a.a.
NCBI ID   WP_094365654.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 917004..929007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS04475 (CFK78_04475) - 917775..918122 (+) 348 WP_229295513.1 hypothetical protein -
  CFK78_RS04480 (CFK78_04480) trxB 918239..919159 (+) 921 WP_076647535.1 thioredoxin-disulfide reductase -
  CFK78_RS04485 (CFK78_04485) - 919315..921039 (+) 1725 WP_076647532.1 phospho-sugar mutase -
  CFK78_RS04490 (CFK78_04490) - 921164..921796 (+) 633 WP_016264744.1 YfbR-like 5'-deoxynucleotidase -
  CFK78_RS04495 (CFK78_04495) uvrB 922004..924007 (+) 2004 WP_094365654.1 excinuclease ABC subunit UvrB Machinery gene
  CFK78_RS04500 (CFK78_04500) uvrA 924017..926869 (+) 2853 WP_061827221.1 excinuclease ABC subunit UvrA Machinery gene
  CFK78_RS04505 (CFK78_04505) - 926991..927527 (+) 537 WP_016264747.1 DUF308 domain-containing protein -
  CFK78_RS04510 (CFK78_04510) rapZ 927653..928537 (+) 885 WP_011374234.1 RNase adapter RapZ -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 76387.66 Da        Isoelectric Point: 4.6130

>NTDB_id=276931 CFK78_RS04495 WP_094365654.1 922004..924007(+) (uvrB) [Latilactobacillus sakei strain ZFM220]
MIDRQNDNLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLIISHNKTLAGQLYA
EFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYQ
NHVLSLRPGMEVERNDLLRQLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDDHALRVEFFGDEIDRIVEVDALTGEVI
GERSHVAIFPATHFMTNDEKMEKAIESIKAELAERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCSGIENYSRHMED
RQAGEPPYTLLDFFPKDSIMMIDESHVTMPQIRGMYNGDRARKQMLIDYGFRLPSALDNRPLTLPEFEEHVNEIMYVSAT
PGPYEAEQTDIQVDQIIRPTGLLDPNIEVRPIMGQIDDLVGEINDRIEKNERVFITTLTKKMSEDLTDYLKELGIKVRYL
HSDVKTLERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRASRNEHGQVLLYADK
ITDSMRHAIDETKRRRTIQEDYNTAHNITPKTIIKPIRDAISMVQSVEHPEEIKMTNEIDLENMSKAEKLEMVERLSEQM
RLAAKKLDFEQAATLRDTILELKSEID

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=276931 CFK78_RS04495 WP_094365654.1 922004..924007(+) (uvrB) [Latilactobacillus sakei strain ZFM220]
ATGATTGATAGACAGAACGATAACCTATTTGACTTAGTCGCACCATATGAACCTGCTGGCGATCAACCTGCTGCAATTGA
AACCTTAACGAAGAATTTTGAGGCAGGTGCTAAGGCCCAGGTCTTGATGGGCGCTACTGGGACCGGGAAAACTTTTACAA
TGTCCAACGTGATTAAGAATCTCAACAAACCAACGTTGATTATTTCGCATAATAAGACATTGGCCGGTCAATTATACGCG
GAATTTAAGCAGTTTTTCCCTAACAATGCGGTTGAATATTTCGTGAGTTATTATGATTACTACCAACCAGAAGCCTATGT
GCCTTCCAGTGATACGTATATCGAAAAAGATTCGAGTATTAATGATGAAATCGATAAACTACGGCATTCAGCGACGAGTT
CGTTATTAGAACGCAACGATGTGATTGTTGTGGCCTCTGTTTCTTGTATCTTTGGGTTAGGGGATCCACGCGAATACCAA
AATCACGTCTTGTCACTGCGTCCAGGAATGGAAGTTGAACGTAACGACCTATTACGTCAGTTAGTTGATATTCAATTTGA
ACGTAACGATATAGATTTTCAACGGGGGCGCTTTAGAGTGCGCGGTGATGTGGTTGAAATTTTCCCAGCTTCTCGTGATG
ATCATGCGCTGCGCGTTGAATTTTTTGGCGATGAAATTGATCGAATTGTCGAAGTGGATGCTTTAACGGGTGAAGTGATT
GGCGAACGGTCGCACGTTGCCATTTTCCCCGCAACGCATTTTATGACGAATGATGAAAAAATGGAAAAAGCGATTGAAAG
TATTAAAGCTGAACTTGCCGAACGGCTAGCTGTTTTAAAAGGCGAGGGTAAGTTACTAGAAGCACAACGCCTTGAACAAC
GAACAAACTATGACCTTGAAATGATGCAAGAAATGGGTTATTGTTCTGGGATTGAAAATTACTCACGCCATATGGAAGAT
CGCCAAGCCGGCGAACCGCCTTACACGTTGCTGGATTTCTTCCCAAAGGATTCAATCATGATGATCGATGAATCCCATGT
CACTATGCCCCAAATTCGGGGGATGTACAACGGTGATCGTGCGCGGAAACAAATGTTGATTGACTATGGTTTCCGGTTAC
CAAGTGCGTTAGATAACCGCCCATTAACGTTGCCAGAATTCGAAGAGCATGTGAATGAAATTATGTATGTGTCGGCCACA
CCAGGGCCTTACGAAGCGGAACAAACCGATATTCAAGTGGATCAGATTATTCGACCAACCGGCCTGTTGGATCCCAATAT
TGAAGTCCGACCAATTATGGGCCAGATTGACGATTTAGTCGGTGAGATCAATGACCGCATTGAAAAGAACGAACGGGTCT
TCATTACAACTTTAACCAAGAAGATGTCGGAAGATTTAACCGATTATCTCAAGGAACTGGGGATCAAAGTCCGGTACTTG
CACAGTGATGTCAAGACGTTGGAACGAACGGAAATTATCCGTGATTTACGACTGGGCAAGTTTGATGTCTTAATTGGGAT
TAACTTATTACGGGAAGGGATCGATGTCCCTGAAGTGTCGTTAGTGGCGATTTTAGACGCGGATAAGGAAGGCTTCTTAC
GGAGTGAACGTTCCTTAATCCAAACCATTGGCCGGGCATCTCGTAATGAACATGGGCAAGTCTTGTTGTACGCCGATAAG
ATTACGGATTCAATGCGTCACGCAATTGATGAAACTAAACGTCGACGGACAATTCAAGAAGACTACAATACAGCTCACAA
CATCACACCGAAGACGATTATTAAACCAATTAGAGATGCGATTTCAATGGTTCAATCAGTTGAACATCCAGAAGAAATTA
AGATGACCAATGAGATTGATCTAGAGAACATGTCGAAGGCTGAAAAACTAGAAATGGTTGAACGACTATCCGAACAGATG
CGCTTAGCAGCTAAGAAACTTGATTTCGAACAAGCGGCGACATTGCGGGATACCATTTTAGAATTAAAAAGTGAAATAGA
TTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

UvrB/uvrC motif (UVR)

(631-664)

Type III restriction enzyme, res subunit (ResIII)

(21-143)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

72.59

99.55

0.723
  uvrB Streptococcus pneumoniae D39

72.59

99.55

0.723
  uvrB Streptococcus pneumoniae TIGR4

72.44

99.55

0.721