Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   CFK78_RS04500 Genome accession   NZ_CP032633
Coordinates   924017..926869 (+) Length   950 a.a.
NCBI ID   WP_061827221.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 919017..931869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS04485 (CFK78_04485) - 919315..921039 (+) 1725 WP_076647532.1 phospho-sugar mutase -
  CFK78_RS04490 (CFK78_04490) - 921164..921796 (+) 633 WP_016264744.1 YfbR-like 5'-deoxynucleotidase -
  CFK78_RS04495 (CFK78_04495) uvrB 922004..924007 (+) 2004 WP_094365654.1 excinuclease ABC subunit UvrB Machinery gene
  CFK78_RS04500 (CFK78_04500) uvrA 924017..926869 (+) 2853 WP_061827221.1 excinuclease ABC subunit UvrA Machinery gene
  CFK78_RS04505 (CFK78_04505) - 926991..927527 (+) 537 WP_016264747.1 DUF308 domain-containing protein -
  CFK78_RS04510 (CFK78_04510) rapZ 927653..928537 (+) 885 WP_011374234.1 RNase adapter RapZ -
  CFK78_RS04515 (CFK78_04515) - 928534..929568 (+) 1035 WP_035146453.1 gluconeogenesis factor YvcK family protein -
  CFK78_RS04520 (CFK78_04520) whiA 929571..930515 (+) 945 WP_011374236.1 DNA-binding protein WhiA -
  CFK78_RS04525 (CFK78_04525) - 930607..931062 (+) 456 WP_035146456.1 MarR family winged helix-turn-helix transcriptional regulator -
  CFK78_RS04530 (CFK78_04530) - 931177..931701 (-) 525 WP_035146459.1 DsbA family protein -

Sequence

Protein


Download         Length: 950 a.a.        Molecular weight: 104671.92 Da        Isoelectric Point: 5.9359

>NTDB_id=276932 CFK78_RS04500 WP_061827221.1 924017..926869(+) (uvrA) [Latilactobacillus sakei strain ZFM220]
MANDKIVIHGARAHNLKDIDVTIPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPDVDSIDG
LSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQPICPNDGTEISSQSVEQMVDRVLALPERTKLQIMSPIVRGK
KGQHKKIFEKIQREGYVRVQVDGEVMDVSTDLELDKNKKHDINIVVDRIVVKDGVRSRLFDSFEAALRLSDGYATADVID
GEQLLFSEHYACPICGFTVGALEPRLFSFNAPFGACPECDGLGLKLEVDTDLVVPDTSKTLREGAIAPWNPISSQYYPQM
LEQACTAFKIDMDRPFSKLTPRQKDIILNGSQGKEFHFHYENDFGGVRDVEVPFEGVLSNIDRRYRETNSDFTRTQMRTY
MTELTCQTCHGKRLNRQALAVKVGGQDIAEVSDNAIKDGLPFFDHLELSEKDQVIAKPILKEVHDRLTFLINVGLDYLTL
SRSAGTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIGSLKKMRDLGNTLIVVEHDEDTMRAADYLIDI
GPGAGDLGGEVMAAGTPTEVEQNPNSLTGRYLAGQDYIPVPLKRRQGNGKKVRVTGAAENNLKDLTVDFPLGEFVAVTGV
SGSGKSTLVNTILKKALAQKMNRNSAKPGQYKTITGYQNLEKLINIDQSPIGRTPRSNPATYTGVFDNVRDLFAQTNEAK
LRGYKKGRFSFNVKGGRCEACKGDGIIKIEMNFLPDVYVPCEICHGSRYNSETLEVVYKGKNIAEILDMTVSEATEFFEN
IPKIARKLQTIVDVGLGYVTLGQSATTLSGGEAQRMKLASELQKQSTGKNLYILDEPTTGLHTDDIKRLLGVLERLVDEG
NTVLVIEHNLDVIKTADHIIDLGPEGGDKGGTIVATGTPETLVNVAESYTGRYLKPILERDTARTLAAQE

Nucleotide


Download         Length: 2853 bp        

>NTDB_id=276932 CFK78_RS04500 WP_061827221.1 924017..926869(+) (uvrA) [Latilactobacillus sakei strain ZFM220]
ATGGCAAATGATAAGATAGTAATTCACGGCGCACGCGCCCATAATTTAAAGGATATCGATGTTACGATTCCAAGAGATAA
GTTAGTGGTCATCACCGGGTTATCTGGTTCTGGGAAGAGCTCTTTAGCATTTGATACGTTATATGCAGAAGGACAACGGC
GCTATGTTGAGAGTTTATCAGCATACGCGCGTCAGTTCTTAGGGCAAATGGATAAGCCGGATGTTGATTCAATTGACGGG
TTAAGTCCAGCGATTTCGATTGACCAAAAGACGACCTCTAAGAATCCACGTTCAACAGTTGGGACAGTCACTGAAATCAA
TGACTACCTCCGCTTATTGTGGGCCCGAGTTGGTCAACCCATCTGTCCAAATGATGGTACTGAAATCAGTAGCCAATCCG
TAGAACAAATGGTTGATCGGGTATTGGCTTTACCAGAACGGACTAAACTCCAAATTATGTCACCGATTGTTCGTGGCAAA
AAAGGGCAACACAAAAAAATCTTCGAGAAGATTCAGCGTGAAGGCTACGTTCGTGTCCAAGTGGATGGCGAAGTAATGGA
TGTTAGCACGGATTTAGAATTAGATAAGAATAAGAAACATGATATCAACATTGTTGTTGATCGAATCGTCGTTAAAGACG
GTGTTCGGTCACGGTTATTTGATTCGTTTGAAGCGGCTTTGAGACTATCTGACGGTTATGCGACAGCTGATGTGATTGAC
GGCGAACAACTCTTGTTTTCTGAACATTATGCTTGTCCAATCTGTGGCTTTACGGTTGGGGCATTAGAACCACGGTTATT
CTCATTTAACGCGCCATTTGGGGCATGTCCTGAATGTGACGGCCTAGGTTTAAAACTAGAAGTTGATACGGACCTCGTTG
TCCCAGATACAAGTAAAACATTGCGTGAAGGGGCGATTGCGCCTTGGAATCCAATCAGTTCGCAATATTACCCACAAATG
TTAGAACAAGCTTGCACGGCCTTTAAAATTGATATGGACCGTCCTTTCAGTAAGTTGACACCTCGCCAAAAAGATATCAT
CTTAAACGGCTCACAAGGCAAAGAATTCCACTTCCATTATGAAAATGATTTTGGTGGCGTTCGCGATGTTGAAGTCCCTT
TTGAAGGGGTCCTCAGCAATATTGACCGTCGTTATCGTGAAACGAATAGTGATTTCACACGGACGCAGATGCGGACCTAT
ATGACGGAATTAACATGTCAAACGTGTCACGGTAAGCGACTAAATCGTCAAGCCTTGGCAGTTAAAGTCGGTGGCCAAGA
TATCGCCGAAGTTTCAGACAATGCAATCAAGGATGGCCTCCCATTCTTTGACCATCTTGAACTTTCCGAAAAAGATCAAG
TGATTGCGAAACCCATTTTGAAAGAAGTCCATGATCGCCTGACTTTCTTGATTAATGTCGGCTTAGACTACTTAACGTTG
AGTCGGTCAGCTGGGACACTTTCCGGTGGGGAAGCACAACGGATTCGTTTGGCCACACAAATTGGATCGAACTTATCTGG
CGTGCTTTATATCTTAGACGAACCTTCAATTGGGTTGCATCAACGCGACAATGATCGCTTAATCGGTTCTTTGAAGAAGA
TGCGCGATTTAGGGAACACTTTAATCGTGGTTGAACATGATGAAGATACGATGCGAGCAGCCGATTATCTCATCGATATT
GGCCCAGGTGCTGGGGATCTCGGTGGGGAAGTGATGGCCGCTGGCACACCAACAGAAGTTGAACAGAATCCCAATTCCTT
AACGGGCCGTTATTTAGCGGGGCAGGATTATATTCCGGTACCGTTAAAACGACGTCAAGGGAATGGCAAAAAGGTGCGGG
TAACTGGCGCTGCCGAAAATAATTTAAAAGATTTAACGGTTGATTTTCCATTAGGTGAATTTGTCGCCGTGACTGGTGTT
TCTGGTTCTGGTAAATCAACATTAGTGAATACGATTTTGAAGAAGGCCCTTGCGCAAAAGATGAATCGTAATTCAGCTAA
ACCGGGTCAATATAAGACCATCACGGGTTATCAAAACCTTGAGAAGTTGATTAATATCGACCAAAGTCCAATTGGCCGCA
CACCGCGGAGTAACCCAGCAACTTATACCGGTGTCTTCGACAATGTCCGAGATTTATTCGCACAAACCAATGAAGCAAAG
TTACGGGGTTACAAGAAGGGCCGCTTTAGTTTTAATGTGAAGGGCGGTCGCTGTGAAGCCTGCAAGGGTGACGGGATTAT
CAAGATTGAAATGAATTTCTTACCGGATGTCTATGTCCCTTGTGAAATTTGTCATGGTAGTCGTTATAATTCGGAAACTT
TAGAAGTGGTTTATAAAGGTAAGAACATTGCTGAAATCTTGGATATGACCGTTTCTGAAGCAACTGAATTCTTCGAAAAC
ATTCCTAAGATTGCTCGTAAACTACAAACAATTGTCGATGTTGGTTTAGGTTATGTGACATTAGGCCAATCAGCAACAAC
CTTATCTGGTGGGGAAGCCCAACGGATGAAATTGGCTTCTGAATTGCAAAAACAATCAACGGGTAAGAATTTGTATATCT
TAGACGAACCAACAACAGGTTTGCATACGGATGATATTAAACGGTTGTTAGGGGTCTTAGAACGGTTAGTTGATGAAGGC
AACACTGTTTTAGTCATTGAACATAACCTTGACGTGATTAAAACGGCTGATCATATCATTGATTTAGGACCAGAAGGTGG
CGACAAAGGTGGTACGATCGTTGCGACCGGCACACCTGAAACATTGGTGAACGTCGCAGAAAGCTATACGGGACGTTATT
TGAAACCAATTTTAGAACGCGATACAGCGCGTACACTAGCGGCACAAGAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-398)

ABC transporter (ABC_tran)

(622-858)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

75.77

99.053

0.751
  uvrA Streptococcus pneumoniae TIGR4

75.77

99.053

0.751
  uvrA Streptococcus pneumoniae D39

75.77

99.053

0.751