Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BURPS668_RS02040 Genome accession   NC_009074
Coordinates   436719..438305 (-) Length   528 a.a.
NCBI ID   WP_011851017.1    Uniprot ID   -
Organism   Burkholderia pseudomallei 668     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 431719..443305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BURPS668_RS02015 (BURPS668_0459) - 432423..432959 (-) 537 WP_004198028.1 peroxiredoxin family protein -
  BURPS668_RS02020 (BURPS668_0460) - 433033..433842 (+) 810 WP_011851012.1 hypothetical protein -
  BURPS668_RS02025 (BURPS668_0462) - 434530..435309 (-) 780 WP_004198026.1 thioesterase II family protein -
  BURPS668_RS40675 - 435428..435616 (-) 189 WP_004198025.1 hypothetical protein -
  BURPS668_RS02035 (BURPS668_0464) - 435814..436278 (+) 465 WP_011851015.1 GNAT family N-acetyltransferase -
  BURPS668_RS02040 (BURPS668_0466) comM 436719..438305 (-) 1587 WP_011851017.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BURPS668_RS02045 (BURPS668_0467) - 438443..438694 (-) 252 WP_011851018.1 accessory factor UbiK family protein -
  BURPS668_RS02050 (BURPS668_0468) - 439063..439401 (+) 339 WP_004198020.1 P-II family nitrogen regulator -
  BURPS668_RS02055 (BURPS668_0469) - 439434..440936 (+) 1503 WP_004526016.1 ammonium transporter -
  BURPS668_RS02060 (BURPS668_0470) gshA 441215..442504 (+) 1290 WP_004522914.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 55470.32 Da        Isoelectric Point: 7.4051

>NTDB_id=27637 BURPS668_RS02040 WP_011851017.1 436719..438305(-) (comM) [Burkholderia pseudomallei 668]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATSPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPGGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
GERFRWSARAYYRVLKVARTIADLAGDDAPSASHIAEAIRYRRAFAPA

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=27637 BURPS668_RS02040 WP_011851017.1 436719..438305(-) (comM) [Burkholderia pseudomallei 668]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGTGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGGCTGCCGTCGTTCTCGATCGTCGGGCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGGTTCGAGTTTCCCGTGCGGCGCATCACCGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGCCAGCTTCCGGCCGGCGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGCTCACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCACGGCGCGCGGCCAGC
AGGCGGACGACGACGGCTCGCCCGCGCAAGCCGAATCGCCGCCCGCGCGGGCGACGTCGCCGAACGCCGCCGAGCTCTAC
CTGCCGCTGCCGAGCGCGGCCGAGGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGATCTGCCCGCGCTGTG
CGCGCACCTCGCCGACACGCCGGACGGGCGGCTCGCCCCCGTCGCCGCGCCCCGGCTCGACGCGCTCCCCGCCGCAGCGA
CGGCCGATCTCGCCGATGTGATCGGCCAGGCGGGCGCGAAGCGCGCGCTCGAAGTCGCCGCCGCGGGCGGCCACCACATG
CTGATGATCGGGCCGCCGGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGCCCTCTTGCCGCCGCTCACCGATGA
CGAGGCGCTGACGTCGGCCGCGATCCTGTCGTCGAGCCGCGCGGGCTTCTCGCCCGCTCAATGGCGGCGGCGCCCGTTTC
GCGCGCCGCATCACTCGTCGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCA
CACCTGGGCGTGCTGTTCCTCGACGAACTGCCGGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAGGC
CGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCGGATTTTCCGGCCGCGTGCCAACTGATCGCCGCGATGAATCCGT
GCCCGTGCGGCTGGCGCGGCGACCCGGGCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTG
TCCGGGCCGCTCCTCGACCGGATCGACATCCAGATCGAGATTCCCGCGCTCACGCCCGCCGAGCTGGCCGAGCGGCCGGC
GGCCGCCGGCGAATCGAGCGAAACCGTGGCCGCGCGCGTCGCGCTCGCGCGCGAGCGGCAATTCGCGAGGCAGCGCAAGA
CCAACCACATGCTGACGGGCCGCGAGACCGATACGCTCTGCCGCCCGGACAGCGCGGGCGAGACGCTGCTGCGCGACGCG
GGCGAGCGGTTCCGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTCGCGCGGACGATCGCGGACCTCGCGGGCGA
CGACGCGCCGAGCGCCTCGCATATCGCCGAGGCGATCCGGTATCGACGGGCGTTCGCGCCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.851

98.864

0.483
  comM Vibrio campbellii strain DS40M4

47.51

98.864

0.47
  comM Haemophilus influenzae Rd KW20

47.036

99.053

0.466
  comM Legionella pneumophila str. Paris

46.476

99.432

0.462
  comM Legionella pneumophila strain ERS1305867

46.476

99.432

0.462
  comM Glaesserella parasuis strain SC1401

46.743

98.864

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.967

98.295

0.422

Multiple sequence alignment