Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   C6N17_RS02275 Genome accession   NZ_CP027254
Coordinates   360073..360825 (+) Length   250 a.a.
NCBI ID   WP_002116684.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP100020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355073..365825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N17_RS02260 (C6N17_02265) ponA 355655..358216 (-) 2562 WP_002116655.1 penicillin-binding protein PBP1a -
  C6N17_RS02265 (C6N17_02270) pilM 358377..359435 (+) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene
  C6N17_RS02270 (C6N17_02275) pilN 359435..360076 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  C6N17_RS02275 (C6N17_02280) pilO 360073..360825 (+) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  C6N17_RS02280 (C6N17_02285) pilP 360836..361363 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  C6N17_RS02285 (C6N17_02290) pilQ 361426..363591 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  C6N17_RS02290 (C6N17_02295) aroK 363603..364172 (+) 570 WP_002116987.1 shikimate kinase AroK -
  C6N17_RS02295 (C6N17_02300) aroB 364201..365283 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28201.04 Da        Isoelectric Point: 4.8782

>NTDB_id=276065 C6N17_RS02275 WP_002116684.1 360073..360825(+) (pilO) [Acinetobacter pittii strain WCHAP100020]
MSPDELHELSLEQAASKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENPEHQEKNASASSVAP
DSSTANTQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=276065 C6N17_RS02275 WP_002116684.1 360073..360825(+) (pilO) [Acinetobacter pittii strain WCHAP100020]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAGCAAGCTGCATCTAAGAAAAAAAAGATCACCTTGGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCCGTATTGGCTTTGGGGTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAGCTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
AATGCATGATTTTGTTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGTGCTGTAGAAAATCCTGAACATCAGGAAAAAAATGCTTCGGCTTCCTCGGTAGCACCT
GATTCTTCTACTGCTAACACACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.6

100

0.836
  comO Acinetobacter baylyi ADP1

70

96

0.672

Multiple sequence alignment