Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C6N17_RS01680 Genome accession   NZ_CP027254
Coordinates   250749..251336 (+) Length   195 a.a.
NCBI ID   WP_002122021.1    Uniprot ID   A0A8I1HCN3
Organism   Acinetobacter pittii strain WCHAP100020     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 245749..256336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N17_RS01655 (C6N17_01660) - 245819..246625 (-) 807 WP_002121905.1 SDR family NAD(P)-dependent oxidoreductase -
  C6N17_RS01660 (C6N17_01665) - 246729..247100 (-) 372 WP_002121939.1 MerR family transcriptional regulator -
  C6N17_RS01665 (C6N17_01670) tenA 247167..247841 (-) 675 WP_002121989.1 thiaminase II -
  C6N17_RS01670 (C6N17_01675) - 248104..249186 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  C6N17_RS01675 (C6N17_01680) yajR 249333..250697 (+) 1365 WP_023187735.1 MFS transporter -
  C6N17_RS01680 (C6N17_01685) ssb 250749..251336 (+) 588 WP_002122021.1 single-stranded DNA-binding protein Machinery gene
  C6N17_RS01685 (C6N17_01690) - 251377..251700 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  C6N17_RS01690 (C6N17_01695) - 251697..252392 (-) 696 WP_005066893.1 AzlC family ABC transporter permease -
  C6N17_RS01695 (C6N17_01700) ydcN 252461..253009 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  C6N17_RS01700 (C6N17_01705) - 253315..254757 (+) 1443 WP_002117418.1 amino acid permease -
  C6N17_RS01705 (C6N17_01710) - 254823..256322 (-) 1500 WP_002117369.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21256.03 Da        Isoelectric Point: 6.4822

>NTDB_id=276062 C6N17_RS01680 WP_002122021.1 250749..251336(+) (ssb) [Acinetobacter pittii strain WCHAP100020]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQSFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
SFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=276062 C6N17_RS01680 WP_002122021.1 250749..251336(+) (ssb) [Acinetobacter pittii strain WCHAP100020]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAAGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
AGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.239

100

0.538
  ssb Vibrio cholerae strain A1552

42.857

100

0.446
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39

Multiple sequence alignment