Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D4K88_RS02635 Genome accession   NZ_CP032475
Coordinates   506750..508270 (+) Length   506 a.a.
NCBI ID   WP_139532042.1    Uniprot ID   -
Organism   Helicobacter pylori strain 381-F-EK9     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 501750..513270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K88_RS02605 moaC 501905..502381 (+) 477 WP_001131545.1 cyclic pyranopterin monophosphate synthase MoaC -
  D4K88_RS02610 hpaA 502494..503276 (+) 783 WP_000646674.1 flagellar sheath lipoprotein HpaA -
  D4K88_RS02615 - 503304..504140 (+) 837 WP_139532040.1 outer membrane protein -
  D4K88_RS02620 tig 504252..505607 (+) 1356 WP_139532041.1 trigger factor -
  D4K88_RS02625 clpP 505628..506215 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D4K88_RS02630 def 506220..506744 (+) 525 WP_001185820.1 peptide deformylase -
  D4K88_RS02635 comM 506750..508270 (+) 1521 WP_139532042.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D4K88_RS02640 - 508295..510355 (+) 2061 WP_139532043.1 heavy metal translocating P-type ATPase -
  D4K88_RS02645 - 510402..510983 (+) 582 Protein_513 restriction endonuclease subunit S -
  D4K88_RS02650 hofF 511254..512753 (-) 1500 WP_139532045.1 outer membrane beta-barrel protein HofF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57093.09 Da        Isoelectric Point: 8.5425

>NTDB_id=276018 D4K88_RS02635 WP_139532042.1 506750..508270(+) (comM) [Helicobacter pylori strain 381-F-EK9]
MINTIFCATMQRGVAEVVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKIIAPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=276018 D4K88_RS02635 WP_139532042.1 506750..508270(+) (comM) [Helicobacter pylori strain 381-F-EK9]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGAGTGGCGGAAGTCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAACTCTATCCAAGAAGCCAAGCAACGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
ACTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAA
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTTGGGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTGCGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTAGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGTTTGTGCGGGAATTTACTCAGTGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAGGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGTGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.617

100

0.986
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment