Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   C6N19_RS02690 Genome accession   NZ_CP027250
Coordinates   324192..324833 (+) Length   213 a.a.
NCBI ID   WP_005078482.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP100004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319192..329833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N19_RS02670 (C6N19_02690) - 319195..319527 (+) 333 WP_002116981.1 hypothetical protein -
  C6N19_RS02675 (C6N19_02695) rrmA 319530..320354 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  C6N19_RS02680 (C6N19_02700) ponA 320411..322972 (-) 2562 WP_057066741.1 penicillin-binding protein PBP1a -
  C6N19_RS02685 (C6N19_02705) pilM 323134..324192 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  C6N19_RS02690 (C6N19_02710) pilN 324192..324833 (+) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  C6N19_RS02695 (C6N19_02715) pilO 324830..325609 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  C6N19_RS02700 (C6N19_02720) pilP 325621..326148 (+) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  C6N19_RS02705 (C6N19_02725) pilQ 326211..328337 (+) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  C6N19_RS02710 (C6N19_02730) aroK 328349..328918 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23961.46 Da        Isoelectric Point: 5.4186

>NTDB_id=276017 C6N19_RS02690 WP_005078482.1 324192..324833(+) (pilN) [Acinetobacter pittii strain WCHAP100004]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLV
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTITDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=276017 C6N19_RS02690 WP_005078482.1 324192..324833(+) (pilN) [Acinetobacter pittii strain WCHAP100004]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGCGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGTG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTCACTGT
TGATGTAGGGGAAATGGGTGTGACTATAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681

Multiple sequence alignment