Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C6N18_RS18290 Genome accession   NZ_CP027246
Coordinates   3574324..3575142 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain WCHAB005078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3569324..3580142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N18_RS18275 (C6N18_18295) pilE 3569543..3569968 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  C6N18_RS18280 (C6N18_18300) pilY2 3569965..3570447 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  C6N18_RS18285 (C6N18_18305) pilY1 3570458..3574312 (-) 3855 WP_059264959.1 vWA domain-containing protein Machinery gene
  C6N18_RS18290 (C6N18_18310) pilX 3574324..3575142 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C6N18_RS18295 (C6N18_18315) pilW 3575139..3576140 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  C6N18_RS18300 (C6N18_18320) pilV 3576141..3576701 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  C6N18_RS18305 (C6N18_18325) fimU 3576695..3577168 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C6N18_RS18310 (C6N18_18330) ispH 3577338..3578288 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C6N18_RS18315 (C6N18_18335) gmk 3578411..3579040 (+) 630 WP_000015937.1 guanylate kinase -
  C6N18_RS18320 (C6N18_18340) rpoZ 3579113..3579391 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  C6N18_RS18325 (C6N18_18345) - 3579430..3579560 (+) 131 Protein_3379 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=276001 C6N18_RS18290 WP_000149374.1 3574324..3575142(-) (pilX) [Acinetobacter baumannii strain WCHAB005078]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=276001 C6N18_RS18290 WP_000149374.1 3574324..3575142(-) (pilX) [Acinetobacter baumannii strain WCHAB005078]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment