Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   C6N18_RS18305 Genome accession   NZ_CP027246
Coordinates   3576695..3577168 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain WCHAB005078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3571695..3582168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N18_RS18290 (C6N18_18310) pilX 3574324..3575142 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C6N18_RS18295 (C6N18_18315) pilW 3575139..3576140 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  C6N18_RS18300 (C6N18_18320) pilV 3576141..3576701 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  C6N18_RS18305 (C6N18_18325) fimU 3576695..3577168 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C6N18_RS18310 (C6N18_18330) ispH 3577338..3578288 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C6N18_RS18315 (C6N18_18335) gmk 3578411..3579040 (+) 630 WP_000015937.1 guanylate kinase -
  C6N18_RS18320 (C6N18_18340) rpoZ 3579113..3579391 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  C6N18_RS18325 (C6N18_18345) - 3579430..3579560 (+) 131 Protein_3379 hypothetical protein -
  C6N18_RS18330 (C6N18_18350) - 3579600..3581705 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=276004 C6N18_RS18305 WP_001214060.1 3576695..3577168(-) (fimU) [Acinetobacter baumannii strain WCHAB005078]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=276004 C6N18_RS18305 WP_001214060.1 3576695..3577168(-) (fimU) [Acinetobacter baumannii strain WCHAB005078]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment