Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C3V42_RS02815 Genome accession   NZ_CP027235
Coordinates   576493..577290 (-) Length   265 a.a.
NCBI ID   WP_106013563.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571493..582290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS02785 (C3V42_02785) nfuA 572340..572936 (-) 597 WP_005634545.1 Fe-S biogenesis protein NfuA -
  C3V42_RS02790 (C3V42_02790) - 573012..573698 (-) 687 WP_164994244.1 ComF family protein -
  C3V42_RS02795 (C3V42_02795) comE 573711..575048 (-) 1338 WP_065265620.1 type IV pilus secretin PilQ family protein Machinery gene
  C3V42_RS02800 (C3V42_02800) comD 575058..575471 (-) 414 WP_048952933.1 pilus assembly protein PilP Machinery gene
  C3V42_RS02805 (C3V42_02805) comC 575468..575989 (-) 522 WP_065265619.1 competence protein ComC Machinery gene
  C3V42_RS02810 (C3V42_02810) comB 575986..576492 (-) 507 WP_065265618.1 competence protein B Machinery gene
  C3V42_RS02815 (C3V42_02815) comA 576493..577290 (-) 798 WP_106013563.1 competence protein ComA Machinery gene
  C3V42_RS02820 (C3V42_02820) - 577389..579992 (+) 2604 WP_106013564.1 penicillin-binding protein 1A -
  C3V42_RS02825 (C3V42_02825) - 580065..580910 (+) 846 WP_106013565.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  C3V42_RS02830 (C3V42_02830) - 580977..581318 (-) 342 WP_005627672.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31343.70 Da        Isoelectric Point: 6.2730

>NTDB_id=275933 C3V42_RS02815 WP_106013563.1 576493..577290(-) (comA) [Haemophilus sp. oral taxon 036 strain F0629]
MQFSSKNHRTLQIGIHRKQGNFDFVWFDELEQPQCYQASINDSDLKNRFLRHLKTQFQGKTFPLQFVASISAHLTWSKVL
MLPQLLNSQECHQQCKFVIEKELPIPLEELWFDYISTPLKQGFRLEITAIREASAQTYLQDFQPFKINVLDIVPHSILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERAQQSQILQSHENLTVLYEQFTERFEGKLEQVFVYQIPSSHTPLPEHWHRV
ETDLPFIALGNALWQKDLHQQKVSS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=275933 C3V42_RS02815 WP_106013563.1 576493..577290(-) (comA) [Haemophilus sp. oral taxon 036 strain F0629]
ATGCAATTCTCCTCGAAAAATCACCGCACTTTACAAATTGGTATTCACCGTAAACAAGGTAATTTTGATTTTGTATGGTT
TGATGAACTTGAACAGCCACAATGTTATCAAGCCTCTATCAATGATAGTGATTTAAAAAATCGTTTTTTGCGACATTTAA
AAACACAATTTCAAGGGAAAACTTTTCCTTTGCAGTTTGTGGCAAGTATTTCTGCTCACTTGACTTGGTCGAAAGTATTA
ATGTTACCGCAACTATTAAATTCACAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGTTGCCTATTCCTTT
AGAGGAATTGTGGTTTGATTATATTTCTACTCCGTTAAAGCAAGGTTTTCGTTTAGAGATTACGGCAATTCGAGAAGCAA
GTGCGCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTAGATATTGTTCCTCATAGCATCTTGCGTGCA
TTTCAATATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
TTGTGAAAGAGCGCAGCAATCGCAAATTTTACAATCTCATGAAAATCTCACTGTACTTTATGAGCAATTTACGGAACGTT
TTGAGGGAAAACTTGAACAAGTTTTTGTGTATCAAATTCCTTCAAGTCATACACCATTACCAGAACACTGGCATAGAGTA
GAAACAGATTTACCCTTTATCGCGCTCGGCAATGCGCTGTGGCAAAAAGATTTACATCAACAAAAAGTGAGTAGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

85.66

100

0.857
  comA Haemophilus influenzae Rd KW20

85.283

100

0.853

Multiple sequence alignment