Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | C3V42_RS02800 | Genome accession | NZ_CP027235 |
| Coordinates | 575058..575471 (-) | Length | 137 a.a. |
| NCBI ID | WP_048952933.1 | Uniprot ID | A0A1B8QNU4 |
| Organism | Haemophilus sp. oral taxon 036 strain F0629 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 570058..580471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3V42_RS02775 (C3V42_02775) | hemE | 570406..571470 (-) | 1065 | WP_106013560.1 | uroporphyrinogen decarboxylase | - |
| C3V42_RS02780 (C3V42_02780) | nudC | 571471..572271 (-) | 801 | WP_106013561.1 | NAD(+) diphosphatase | - |
| C3V42_RS02785 (C3V42_02785) | nfuA | 572340..572936 (-) | 597 | WP_005634545.1 | Fe-S biogenesis protein NfuA | - |
| C3V42_RS02790 (C3V42_02790) | - | 573012..573698 (-) | 687 | WP_164994244.1 | ComF family protein | - |
| C3V42_RS02795 (C3V42_02795) | comE | 573711..575048 (-) | 1338 | WP_065265620.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| C3V42_RS02800 (C3V42_02800) | comD | 575058..575471 (-) | 414 | WP_048952933.1 | pilus assembly protein PilP | Machinery gene |
| C3V42_RS02805 (C3V42_02805) | comC | 575468..575989 (-) | 522 | WP_065265619.1 | competence protein ComC | Machinery gene |
| C3V42_RS02810 (C3V42_02810) | comB | 575986..576492 (-) | 507 | WP_065265618.1 | competence protein B | Machinery gene |
| C3V42_RS02815 (C3V42_02815) | comA | 576493..577290 (-) | 798 | WP_106013563.1 | competence protein ComA | Machinery gene |
| C3V42_RS02820 (C3V42_02820) | - | 577389..579992 (+) | 2604 | WP_106013564.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15706.87 Da Isoelectric Point: 4.4937
>NTDB_id=275930 C3V42_RS02800 WP_048952933.1 575058..575471(-) (comD) [Haemophilus sp. oral taxon 036 strain F0629]
MKHWFFLIILFFMNCSWGQDPFDKTQRNSSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAVEIPLNALKLVGVVISKD
KAFALLQDQDLQIYSVLEGVDVAKEGYLVEKIHQNKVQFMRKLGEQCDSTEQKELSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNSSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAVEIPLNALKLVGVVISKD
KAFALLQDQDLQIYSVLEGVDVAKEGYLVEKIHQNKVQFMRKLGEQCDSTEQKELSF
Nucleotide
Download Length: 414 bp
>NTDB_id=275930 C3V42_RS02800 WP_048952933.1 575058..575471(-) (comD) [Haemophilus sp. oral taxon 036 strain F0629]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACAGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GTGGAGCGGATGAAAATCGCCAAGCAGTTGAAATTCCTTTGAACGCTTTAAAATTGGTAGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCGTTATTGCAGGATCAGGATTTGCAAATTTACAGTGTTTTAGAGGGCGTTGATGTGGCTAAAGAGGGCTA
TCTAGTGGAAAAAATTCATCAAAATAAAGTGCAATTTATGCGTAAGCTCGGTGAGCAATGTGATAGCACTGAACAGAAAG
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACAGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GTGGAGCGGATGAAAATCGCCAAGCAGTTGAAATTCCTTTGAACGCTTTAAAATTGGTAGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCGTTATTGCAGGATCAGGATTTGCAAATTTACAGTGTTTTAGAGGGCGTTGATGTGGCTAAAGAGGGCTA
TCTAGTGGAAAAAATTCATCAAAATAAAGTGCAATTTATGCGTAAGCTCGGTGAGCAATGTGATAGCACTGAACAGAAAG
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
92.701 |
100 |
0.927 |
| comD | Haemophilus influenzae Rd KW20 |
91.971 |
100 |
0.92 |