Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C3V42_RS02805 Genome accession   NZ_CP027235
Coordinates   575468..575989 (-) Length   173 a.a.
NCBI ID   WP_065265619.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570468..580989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS02780 (C3V42_02780) nudC 571471..572271 (-) 801 WP_106013561.1 NAD(+) diphosphatase -
  C3V42_RS02785 (C3V42_02785) nfuA 572340..572936 (-) 597 WP_005634545.1 Fe-S biogenesis protein NfuA -
  C3V42_RS02790 (C3V42_02790) - 573012..573698 (-) 687 WP_164994244.1 ComF family protein -
  C3V42_RS02795 (C3V42_02795) comE 573711..575048 (-) 1338 WP_065265620.1 type IV pilus secretin PilQ family protein Machinery gene
  C3V42_RS02800 (C3V42_02800) comD 575058..575471 (-) 414 WP_048952933.1 pilus assembly protein PilP Machinery gene
  C3V42_RS02805 (C3V42_02805) comC 575468..575989 (-) 522 WP_065265619.1 competence protein ComC Machinery gene
  C3V42_RS02810 (C3V42_02810) comB 575986..576492 (-) 507 WP_065265618.1 competence protein B Machinery gene
  C3V42_RS02815 (C3V42_02815) comA 576493..577290 (-) 798 WP_106013563.1 competence protein ComA Machinery gene
  C3V42_RS02820 (C3V42_02820) - 577389..579992 (+) 2604 WP_106013564.1 penicillin-binding protein 1A -
  C3V42_RS02825 (C3V42_02825) - 580065..580910 (+) 846 WP_106013565.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19896.04 Da        Isoelectric Point: 9.6837

>NTDB_id=275931 C3V42_RS02805 WP_065265619.1 575468..575989(-) (comC) [Haemophilus sp. oral taxon 036 strain F0629]
MKAFFNDPFTPFGKWLSQPFCVHGLTFLLLLSAVIFRPVLDYIEGISRFHEIESELAGKRSELLHQQKILTSLQQQSESR
KLSSEQAAQIMPLNKQIQRLAARNGLSQNLRWEMGQQPILHLQLTGHFEKTKTFLTALLANTSQLSVSRLQFMKPEDSPL
QTEIIFQLDKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=275931 C3V42_RS02805 WP_065265619.1 575468..575989(-) (comC) [Haemophilus sp. oral taxon 036 strain F0629]
GTGAAAGCCTTTTTTAACGATCCTTTTACACCTTTTGGAAAATGGCTAAGTCAGCCTTTTTGTGTGCACGGTTTAACTTT
TTTATTGTTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATTGAGGGGATCTCGCGTTTCCATGAAATCGAAA
GTGAATTAGCAGGGAAAAGATCAGAATTGTTGCATCAACAGAAAATCTTAACCTCTTTACAGCAGCAATCGGAAAGCCGA
AAACTTTCTTCAGAACAGGCTGCACAAATTATGCCGTTGAATAAACAAATTCAACGTTTAGCTGCGCGTAACGGTTTATC
TCAGAATTTACGTTGGGAAATGGGGCAACAGCCCATTTTGCATTTACAGCTTACAGGGCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTAGCTAATACGTCACAGCTTTCTGTAAGTCGGCTGCAATTTATGAAACCCGAAGACAGCCCATTG
CAAACCGAGATTATTTTTCAGCTAGATAAGGAGACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

93.064

100

0.931
  comC Haemophilus influenzae Rd KW20

93.064

100

0.931

Multiple sequence alignment