Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | C2E19_RS25240 | Genome accession | NZ_CP027218 |
| Coordinates | 5509439..5510311 (+) | Length | 290 a.a. |
| NCBI ID | WP_129395556.1 | Uniprot ID | A0A481R233 |
| Organism | Pseudomonas sp. DTU12.3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5504439..5515311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2E19_RS25215 (C2E19_25255) | - | 5504678..5504974 (+) | 297 | WP_129395551.1 | DUF2845 domain-containing protein | - |
| C2E19_RS25220 (C2E19_25260) | - | 5505209..5505562 (-) | 354 | WP_129395552.1 | BON domain-containing protein | - |
| C2E19_RS25225 (C2E19_25265) | - | 5505859..5506290 (-) | 432 | WP_129395553.1 | pilin | - |
| C2E19_RS25230 (C2E19_25270) | pilB | 5506517..5508217 (+) | 1701 | WP_129395554.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| C2E19_RS25235 (C2E19_25275) | pilC | 5508220..5509437 (+) | 1218 | WP_129395555.1 | type II secretion system F family protein | Machinery gene |
| C2E19_RS25240 (C2E19_25280) | pilD | 5509439..5510311 (+) | 873 | WP_129395556.1 | A24 family peptidase | Machinery gene |
| C2E19_RS25245 (C2E19_25285) | coaE | 5510308..5510931 (+) | 624 | WP_129395557.1 | dephospho-CoA kinase | - |
| C2E19_RS25250 (C2E19_25290) | yacG | 5510928..5511128 (+) | 201 | WP_129395558.1 | DNA gyrase inhibitor YacG | - |
| C2E19_RS25255 (C2E19_25295) | - | 5511135..5511350 (-) | 216 | WP_007909901.1 | hypothetical protein | - |
| C2E19_RS25260 (C2E19_25300) | - | 5511416..5512105 (-) | 690 | WP_129395559.1 | energy-coupling factor ABC transporter permease | - |
| C2E19_RS25265 (C2E19_25305) | - | 5512285..5512911 (+) | 627 | WP_064392452.1 | DUF1780 domain-containing protein | - |
| C2E19_RS25270 (C2E19_25310) | - | 5512908..5513435 (+) | 528 | WP_129395560.1 | MOSC domain-containing protein | - |
| C2E19_RS25275 (C2E19_25315) | - | 5513487..5513660 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| C2E19_RS25280 (C2E19_25320) | - | 5513727..5515025 (+) | 1299 | WP_095121769.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32242.52 Da Isoelectric Point: 7.1246
>NTDB_id=275803 C2E19_RS25240 WP_129395556.1 5509439..5510311(+) (pilD) [Pseudomonas sp. DTU12.3]
MPIDELFALYPLAFVCTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPAEPPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLALRGRCSACAAAISKRYPLTELACGLLSAFIAWHFGFGWPAALLIFLSWGLLAMSLIDVEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGTVAGYMALWSVFWLFKLLTGKDGMGHGDFKLLALFGAWGGWQILPLTILLSSLVG
AVIGVILLRLRAQETSTPIPFGPYLAIAGWIAMLWGGQITDFYWQFVGLK
MPIDELFALYPLAFVCTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPAEPPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLALRGRCSACAAAISKRYPLTELACGLLSAFIAWHFGFGWPAALLIFLSWGLLAMSLIDVEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGTVAGYMALWSVFWLFKLLTGKDGMGHGDFKLLALFGAWGGWQILPLTILLSSLVG
AVIGVILLRLRAQETSTPIPFGPYLAIAGWIAMLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=275803 C2E19_RS25240 WP_129395556.1 5509439..5510311(+) (pilD) [Pseudomonas sp. DTU12.3]
ATGCCTATCGACGAACTGTTTGCCCTGTATCCGCTGGCCTTTGTTTGCACCGCGTTGCTGCTCGGCCTGGTGGTCGGCAG
CTTCCTCAACGTGTTGATCTGGCGTCTGCCGAAAATGCTTGAGCGCGATTGGCGTCAGCAGGCCCACGACGTATTGGGCT
TGCCTGCCGAACCACCGCTGCCCACCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCATTGCGCGCATCGAATTCGC
GCCTGGGAAAACATTCCGCTGCTCAGTTATCTGGCGCTGCGCGGACGTTGCTCAGCCTGCGCGGCAGCGATCAGCAAACG
TTATCCACTGACCGAACTGGCCTGCGGCTTGCTCTCGGCATTCATCGCCTGGCATTTCGGTTTTGGCTGGCCGGCCGCTC
TGCTGATCTTCCTCAGCTGGGGGTTGCTGGCGATGAGCTTGATCGACGTCGAGCATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGTTTGATCGTCAACAGTTTCGGCCTGTTCGTGCCGCTGCATGACGCCTTGTGGGGCACCGT
CGCCGGGTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGTTGCTGACCGGCAAGGACGGCATGGGCCATGGCGATT
TCAAGCTGCTGGCGTTGTTCGGCGCCTGGGGCGGTTGGCAGATTCTGCCGCTGACGATTCTGCTGTCGTCGTTGGTGGGC
GCGGTGATCGGGGTGATTCTGTTGCGTTTGCGCGCGCAGGAAACCTCCACGCCAATCCCTTTCGGTCCCTATCTGGCAAT
TGCCGGCTGGATTGCCATGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCCTGTATCCGCTGGCCTTTGTTTGCACCGCGTTGCTGCTCGGCCTGGTGGTCGGCAG
CTTCCTCAACGTGTTGATCTGGCGTCTGCCGAAAATGCTTGAGCGCGATTGGCGTCAGCAGGCCCACGACGTATTGGGCT
TGCCTGCCGAACCACCGCTGCCCACCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCATTGCGCGCATCGAATTCGC
GCCTGGGAAAACATTCCGCTGCTCAGTTATCTGGCGCTGCGCGGACGTTGCTCAGCCTGCGCGGCAGCGATCAGCAAACG
TTATCCACTGACCGAACTGGCCTGCGGCTTGCTCTCGGCATTCATCGCCTGGCATTTCGGTTTTGGCTGGCCGGCCGCTC
TGCTGATCTTCCTCAGCTGGGGGTTGCTGGCGATGAGCTTGATCGACGTCGAGCATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGTTTGATCGTCAACAGTTTCGGCCTGTTCGTGCCGCTGCATGACGCCTTGTGGGGCACCGT
CGCCGGGTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGTTGCTGACCGGCAAGGACGGCATGGGCCATGGCGATT
TCAAGCTGCTGGCGTTGTTCGGCGCCTGGGGCGGTTGGCAGATTCTGCCGCTGACGATTCTGCTGTCGTCGTTGGTGGGC
GCGGTGATCGGGGTGATTCTGTTGCGTTTGCGCGCGCAGGAAACCTCCACGCCAATCCCTTTCGGTCCCTATCTGGCAAT
TGCCGGCTGGATTGCCATGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.77 |
97.586 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
51.773 |
97.241 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
47.902 |
98.621 |
0.472 |
| pilD | Acinetobacter nosocomialis M2 |
47.902 |
98.621 |
0.472 |
| pilD | Neisseria gonorrhoeae MS11 |
47.778 |
93.103 |
0.445 |