Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RSPH17029_RS02235 Genome accession   NC_009049
Coordinates   456944..457465 (-) Length   173 a.a.
NCBI ID   WP_009563714.1    Uniprot ID   -
Organism   Cereibacter sphaeroides ATCC 17029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 451944..462465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSPH17029_RS02220 (Rsph17029_0436) - 453763..454089 (-) 327 WP_002722633.1 YnfA family protein -
  RSPH17029_RS02225 (Rsph17029_0437) - 454089..454514 (-) 426 WP_043827908.1 MerR family transcriptional regulator -
  RSPH17029_RS02230 (Rsph17029_0438) - 454598..456820 (+) 2223 WP_011840358.1 heavy metal translocating P-type ATPase -
  RSPH17029_RS02235 (Rsph17029_0439) ssb 456944..457465 (-) 522 WP_009563714.1 single-stranded DNA-binding protein Machinery gene
  RSPH17029_RS02240 (Rsph17029_0440) - 457679..458293 (+) 615 WP_011840359.1 lytic transglycosylase domain-containing protein -
  RSPH17029_RS02245 (Rsph17029_0441) serS 458417..459709 (-) 1293 WP_011840360.1 serine--tRNA ligase -
  RSPH17029_RS02250 (Rsph17029_0442) - 459816..460373 (-) 558 WP_011840361.1 superoxide dismutase family protein -
  RSPH17029_RS02255 (Rsph17029_0443) yajC 460657..460983 (+) 327 WP_002722646.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18631.35 Da        Isoelectric Point: 5.9820

>NTDB_id=27575 RSPH17029_RS02235 WP_009563714.1 456944..457465(-) (ssb) [Cereibacter sphaeroides ATCC 17029]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTEWHSVAIFDENLARVAEQYLRKGSTVYI
EGQLETRKWQDQSGQDRYSTEVVLRPFRSSLTMLGGRGEGAGAGGGMGGGGYEDRGGPDSYDNYGSSPRGGASSGGAPSG
GGRRNDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=27575 RSPH17029_RS02235 WP_009563714.1 456944..457465(-) (ssb) [Cereibacter sphaeroides ATCC 17029]
ATGGCGGGCTCGGTCAACAAGGTCATCATCATCGGCAATCTCGGCCGCGATCCCGAGGTGCGTAGCTTCCAGAACGGCGG
CAAGGTGGTGAACCTCCGCATCGCCACGTCCGAGCAGTGGCGCGACCGCGCCTCGGGCGAGCGGAAGGAGCGCACCGAAT
GGCACTCGGTCGCCATCTTCGACGAGAACCTGGCGCGGGTGGCCGAGCAGTATCTGCGCAAGGGCTCGACCGTCTATATC
GAGGGCCAGCTCGAGACGCGGAAGTGGCAGGACCAGTCGGGTCAGGACCGCTACTCGACCGAGGTCGTGCTGCGCCCGTT
CCGCAGCTCGCTGACGATGCTCGGAGGGCGCGGCGAAGGCGCCGGCGCAGGCGGCGGCATGGGTGGTGGCGGCTACGAGG
ATCGCGGCGGGCCGGACAGCTACGACAATTACGGCAGCAGCCCCCGCGGCGGCGCCTCCTCGGGCGGCGCCCCGAGCGGC
GGCGGCCGCCGGAACGATCTCGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.526
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.491
  ssb Neisseria meningitidis MC58

40.556

100

0.422
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.422

Multiple sequence alignment