Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D2M30_RS17450 Genome accession   NZ_CP032146
Coordinates   3420568..3422553 (-) Length   661 a.a.
NCBI ID   WP_065522323.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3415568..3427553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS17430 (D2M30_17455) - 3415755..3416852 (-) 1098 WP_125123314.1 DUF4097 domain-containing protein -
  D2M30_RS17435 (D2M30_17460) - 3416876..3417202 (-) 327 WP_025649342.1 hypothetical protein -
  D2M30_RS17440 (D2M30_17465) - 3417400..3417639 (+) 240 WP_125123315.1 hypothetical protein -
  D2M30_RS17445 (D2M30_17470) uvrA 3417687..3420560 (-) 2874 WP_013353756.1 excinuclease ABC subunit UvrA Machinery gene
  D2M30_RS17450 (D2M30_17475) uvrB 3420568..3422553 (-) 1986 WP_065522323.1 excinuclease ABC subunit UvrB Machinery gene
  D2M30_RS17455 (D2M30_17480) - 3422729..3422965 (-) 237 WP_003151438.1 CsbA family protein -
  D2M30_RS17460 (D2M30_17485) - 3423264..3425765 (+) 2502 WP_125123316.1 PEP/pyruvate-binding domain-containing protein -
  D2M30_RS17465 (D2M30_17490) - 3425837..3426406 (+) 570 WP_065522325.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76470.24 Da        Isoelectric Point: 5.2441

>NTDB_id=274887 D2M30_RS17450 WP_065522323.1 3420568..3422553(-) (uvrB) [Bacillus amyloliquefaciens strain YP6]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITHSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=274887 D2M30_RS17450 WP_065522323.1 3420568..3422553(-) (uvrB) [Bacillus amyloliquefaciens strain YP6]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGCGCGACAGGGACGGGCAAAACCTTTACCGTGTCTAATTTGATTA
AAGAAGTCAACAAGCCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTTCCGAACAACGCTGTCGAATACTTTGTCAGCTACTACGATTACTATCAGCCGGAGGCGTATGTGCCTCAGACGGATAC
ATTTATAGAGAAAGACGCAAGCATTAACGATGAAATTGATAAACTGAGACACTCCGCCACATCCTCTCTGTTTGAACGGA
GAGATGTCATTATTATCGCGAGTGTATCATGCATATACGGTCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGAAATGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGGGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGTGATGAAATTGAGCGGATCAGAGAGGTTGACGCTTTGACCGGAGAAATTCTCGGCGACCGCGATCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACACGGGCAGAGAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTAAAAGTCATGCACGAAAACGGCAAGCTTCTGGAAGCCCAGCGCCTTGAGCAGCGCACAAGATATGATC
TTGAAATGATGCGTGAAATGGGTTTCTGCTCGGGGATCGAGAACTATTCAAGACACTTGACGCTCCGTCCTCCGGGCTCC
ACGCCGTATACGCTGCTTGATTATTTTCCGGACGATTTTATGATTGTCGTTGATGAATCACACGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCTAGAAAACAGGTGCTCGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTCCGATTCGAGGAATTTGAAAAGCACATGCACAATATCGTGTACGTCTCTGCTACCCCGGGACCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGGCCGACGGGACTTCTCGATCCTCTCATTGATGTCCGCCCGAT
CGAAGGGCAGATTGATGATCTGATCGGTGAGATTCAGGCGAGGATTGAACGGAATGAACGCGTGCTCGTGACGACTTTAA
CGAAAAAAATGTCAGAGGACCTGACCGATTATCTGAAGGAAATCGGCATCAAGGTCAATTATCTTCATTCTGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGACCTCCGCCTCGGGAAACATGATGTGTTAATCGGCATCAACCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTGGATGCGGATAAAGAAGGCTTCCTCCGTTCCGAGCGTTCGC
TGATTCAGACGATCGGACGGGCGGCCCGGAACGCAGAGGGACGCGTCATCATGTACGCCGATAAAATCACGCATTCGATG
GAAATTGCGATTAATGAAACGAAGCGCCGGCGGGAACAGCAGGAGCGCTTTAACGAAATCCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGC
CTAAGCTGGCGAAGATGACGAAGAAAGAACGCCAGAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAGCGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTAAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(12-130)

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB/uvrC motif (UVR)

(626-659)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae R6

70.32

99.395

0.699
  uvrB Streptococcus pneumoniae D39

70.32

99.395

0.699