Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C5Y82_RS08880 Genome accession   NZ_CP027034
Coordinates   1760449..1760829 (+) Length   126 a.a.
NCBI ID   WP_225970079.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1755449..1765829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS08870 (C5Y82_08870) - 1755941..1759084 (+) 3144 WP_119124942.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  C5Y82_RS08875 (C5Y82_08875) - 1759279..1760187 (+) 909 WP_041815555.1 trypsin-like serine protease -
  C5Y82_RS08880 (C5Y82_08880) nucA/comI 1760449..1760829 (+) 381 WP_225970079.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C5Y82_RS08885 (C5Y82_08885) - 1760968..1761816 (+) 849 WP_012010093.1 STAS domain-containing protein -
  C5Y82_RS08890 (C5Y82_08890) - 1761848..1762390 (-) 543 WP_012010094.1 IseA DL-endopeptidase inhibitor family protein -
  C5Y82_RS08895 (C5Y82_08895) - 1762685..1763119 (+) 435 WP_012010095.1 hypothetical protein -
  C5Y82_RS08900 (C5Y82_08900) lexA 1763165..1763785 (-) 621 WP_012010096.1 transcriptional repressor LexA -
  C5Y82_RS08905 (C5Y82_08905) yneA 1763945..1764256 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  C5Y82_RS08910 (C5Y82_08910) - 1764274..1764921 (+) 648 WP_012010098.1 recombinase family protein -
  C5Y82_RS08915 (C5Y82_08915) - 1764991..1765221 (+) 231 WP_003211509.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13849.47 Da        Isoelectric Point: 7.3831

>NTDB_id=274648 C5Y82_RS08880 WP_225970079.1 1760449..1760829(+) (nucA/comI) [Bacillus pumilus strain 150a]
MGTLLSGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCFEGGKGASVQYVSPSDNRGAGSWVGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=274648 C5Y82_RS08880 WP_225970079.1 1760449..1760829(+) (nucA/comI) [Bacillus pumilus strain 150a]
ATGGGCACGCTGTTAAGTGGATTTGGGGAGGAACATGCAGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAAGAACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGTGCAGATGCCCGCAGGCAAGAATCTTTAAAAGGCATTCCGACTAAACCAGGATTCGACCGAGATGAGTGGCCA
ATGGCCGTTTGTTTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCTTCTGATAATAGGGGAGCAGGCTCATG
GGTTGGACACCAGATGAGTGGGTATCCTGATGGGAAAAGAATATTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment