Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C5Y82_RS11260 Genome accession   NZ_CP027034
Coordinates   2204885..2205688 (-) Length   267 a.a.
NCBI ID   WP_119125097.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2199885..2210688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS11240 (C5Y82_11240) - 2202088..2202324 (+) 237 WP_012010516.1 DUF2627 domain-containing protein -
  C5Y82_RS11245 (C5Y82_11245) - 2202360..2203097 (-) 738 WP_012010517.1 glycerophosphodiester phosphodiesterase -
  C5Y82_RS11250 (C5Y82_11250) - 2203328..2204428 (-) 1101 WP_012010518.1 Rap family tetratricopeptide repeat protein -
  C5Y82_RS11255 (C5Y82_11255) - 2204416..2204613 (-) 198 WP_041815709.1 hypothetical protein -
  C5Y82_RS11260 (C5Y82_11260) spo0A 2204885..2205688 (-) 804 WP_119125097.1 sporulation transcription factor Spo0A Regulator
  C5Y82_RS11265 (C5Y82_11265) spoIVB 2205974..2207251 (-) 1278 WP_119125098.1 SpoIVB peptidase -
  C5Y82_RS11270 (C5Y82_11270) recN 2207450..2209186 (-) 1737 WP_012010522.1 DNA repair protein RecN Machinery gene
  C5Y82_RS11275 (C5Y82_11275) argR 2209220..2209669 (-) 450 WP_012010523.1 transcriptional regulator ArgR -
  C5Y82_RS11280 (C5Y82_11280) - 2209830..2210684 (-) 855 WP_012010524.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29919.46 Da        Isoelectric Point: 6.3913

>NTDB_id=274650 C5Y82_RS11260 WP_119125097.1 2204885..2205688(-) (spo0A) [Bacillus pumilus strain 150a]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRESNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREVISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=274650 C5Y82_RS11260 WP_119125097.1 2204885..2205688(-) (spo0A) [Bacillus pumilus strain 150a]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGCCTTGCTGTACTGGAACGCCTCCGTGAAAGCAATGACATGACCAAACAG
CCAAGTGTCATTATGCTAACAGCGTTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGATTTGGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTTCTTCGAAATAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCTCATATTAAAGGTTACTTATACTTAAGAGAAGTCATTTCAATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATTGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GGGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGTATGTCTAAAGCGAAACCAACCAATTCTGAATTTATCGCTATGGTGGCTGATCGTCTACGCTTGGAGCATAGAGCTAG
CTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888

Multiple sequence alignment