Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C5Y82_RS11270 Genome accession   NZ_CP027034
Coordinates   2207450..2209186 (-) Length   578 a.a.
NCBI ID   WP_012010522.1    Uniprot ID   A8FF08
Organism   Bacillus pumilus strain 150a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2202450..2214186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS11250 (C5Y82_11250) - 2203328..2204428 (-) 1101 WP_012010518.1 Rap family tetratricopeptide repeat protein -
  C5Y82_RS11255 (C5Y82_11255) - 2204416..2204613 (-) 198 WP_041815709.1 hypothetical protein -
  C5Y82_RS11260 (C5Y82_11260) spo0A 2204885..2205688 (-) 804 WP_119125097.1 sporulation transcription factor Spo0A Regulator
  C5Y82_RS11265 (C5Y82_11265) spoIVB 2205974..2207251 (-) 1278 WP_119125098.1 SpoIVB peptidase -
  C5Y82_RS11270 (C5Y82_11270) recN 2207450..2209186 (-) 1737 WP_012010522.1 DNA repair protein RecN Machinery gene
  C5Y82_RS11275 (C5Y82_11275) argR 2209220..2209669 (-) 450 WP_012010523.1 transcriptional regulator ArgR -
  C5Y82_RS11280 (C5Y82_11280) - 2209830..2210684 (-) 855 WP_012010524.1 TlyA family RNA methyltransferase -
  C5Y82_RS11285 (C5Y82_11285) dxs 2210681..2212582 (-) 1902 WP_119125099.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C5Y82_RS11290 (C5Y82_11290) - 2212733..2213623 (-) 891 WP_012010526.1 polyprenyl synthetase family protein -
  C5Y82_RS11295 (C5Y82_11295) - 2213613..2213873 (-) 261 WP_012010527.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64806.60 Da        Isoelectric Point: 4.7769

>NTDB_id=274651 C5Y82_RS11270 WP_012010522.1 2207450..2209186(-) (recN) [Bacillus pumilus strain 150a]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDASDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELDQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDTHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=274651 C5Y82_RS11270 WP_012010522.1 2207450..2209186(-) (recN) [Bacillus pumilus strain 150a]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACGGGGGAAACAGGTGCAGGGAAATCCATCATGATCGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAAGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCCGATCACCCTGTATTTGCTTTA
TGCGAGGAGCAAGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATCTG
CCGCATCAATGGCAAGCTCGTCACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAACATG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTGCTCGATCAATTTGGTGCAGAAGAAATTGCACCTGCTTTG
TCGCAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAAAATGAGCAAGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGACGAGAAGC
TTCAAGAAGAGCGTCATCAGATCAGCAACTACGAAAAGATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAACAGGGGGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGATCAGGTTTCTGAAATCAACGATGATCTGAAAAA
ACTATCCGAACAAGTGTCGAACTCTTACTATTTATTAGAAGATTCGACGTTCCAAATGAGAAGCATGCTGGATCAATTAG
AATTTGACCCTGCACGTCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACGACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACACTCATCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCACTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCT
ATTCGGTATGCGCCTTTTAGCAGCACAGATAATCCGCTCCTAGATGGAAAGCCCGTCCAGCTCGGAAAAAACGGAATTGA
TCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCGTCCGGTGGAGAAATTT
CACGTGTGATGCTCGCTGTGAAAAGTATCTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGTGTAAGTGGCAGAGTTGCACAGGCGATTGCTGAGAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCAAAACGCTCTAAAGCTGGTAGAACACTGACAA
GTGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACA
AAACAGCACGCAAAAGAATTGCTCCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FF08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.74

100

0.747

Multiple sequence alignment