Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C5S64_RS04355 Genome accession   NZ_CP027027
Coordinates   789681..790217 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain E670/74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 784681..795217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5S64_RS04330 soxR 786409..786873 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  C5S64_RS04335 soxS 786959..787282 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C5S64_RS04340 pdeC 787285..788871 (-) 1587 Protein_793 c-di-GMP phosphodiesterase PdeC -
  C5S64_RS04350 - 789301..789582 (+) 282 WP_001295689.1 YjcB family protein -
  C5S64_RS04355 ssb 789681..790217 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C5S64_RS04360 uvrA 790471..793293 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C5S64_RS04365 - 793328..793684 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C5S64_RS04370 - 793688..794104 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C5S64_RS04375 aphA 794215..794928 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=274555 C5S64_RS04355 WP_000168305.1 789681..790217(-) (ssb) [Shigella dysenteriae strain E670/74]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=274555 C5S64_RS04355 WP_000168305.1 789681..790217(-) (ssb) [Shigella dysenteriae strain E670/74]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment