Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C5E22_RS03965 Genome accession   NZ_CP026982
Coordinates   879626..880168 (-) Length   180 a.a.
NCBI ID   WP_014701314.1    Uniprot ID   A0AAE9SYY7
Organism   Pectobacterium parmentieri strain IFB5486     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 874626..885168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5E22_RS03940 (C5E22_03935) - 875082..875513 (+) 432 WP_025919366.1 GNAT family N-acetyltransferase -
  C5E22_RS03945 (C5E22_03940) - 875654..876085 (+) 432 WP_033072116.1 carboxymuconolactone decarboxylase family protein -
  C5E22_RS03950 (C5E22_03945) - 876197..876787 (-) 591 WP_033072115.1 hypothetical protein -
  C5E22_RS03955 (C5E22_03950) - 876855..877310 (-) 456 WP_183042266.1 GNAT family N-acetyltransferase -
  C5E22_RS03960 (C5E22_03955) - 877542..879383 (-) 1842 WP_033072114.1 amidohydrolase -
  C5E22_RS03965 (C5E22_03960) ssb 879626..880168 (-) 543 WP_014701314.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C5E22_RS03970 (C5E22_03965) uvrA 880418..883252 (+) 2835 WP_014701313.1 excinuclease ABC subunit UvrA -
  C5E22_RS03975 (C5E22_03970) - 883270..883689 (+) 420 WP_015731174.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19099.08 Da        Isoelectric Point: 5.2456

>NTDB_id=274210 C5E22_RS03965 WP_014701314.1 879626..880168(-) (ssb) [Pectobacterium parmentieri strain IFB5486]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=274210 C5E22_RS03965 WP_014701314.1 879626..880168(-) (ssb) [Pectobacterium parmentieri strain IFB5486]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTTGCAGGCGAATACCTGCGCAAAGGCTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTTGTTAACGTCGG
CGGCACCATGCAGATGCTAGGTGGACGACAGGGCGGCGGCGCACCAGCAGGCGGTAATGCAGGTGGCGGTCAGCAGCAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGTGCGCAAGCTCAGCAGCGTCCGGCACAG
AACAGCGCGCCCGCACAAAGTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461

Multiple sequence alignment