Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2E16_RS05025 Genome accession   NZ_CP032064
Coordinates   1054729..1055409 (+) Length   226 a.a.
NCBI ID   WP_002935253.1    Uniprot ID   Q83VP0
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049729..1060409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS05010 (D2E16_05135) - 1050243..1051226 (-) 984 WP_014637860.1 L-lactate dehydrogenase -
  D2E16_RS05015 (D2E16_05140) gyrA 1051415..1053859 (+) 2445 WP_192370033.1 DNA gyrase subunit A -
  D2E16_RS05020 (D2E16_05145) - 1053866..1054615 (+) 750 WP_099831280.1 class A sortase -
  D2E16_RS05025 (D2E16_05150) radC 1054729..1055409 (+) 681 WP_002935253.1 RadC family protein Machinery gene
  D2E16_RS05030 (D2E16_05155) - 1055406..1056098 (-) 693 WP_099778909.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  D2E16_RS05035 (D2E16_05160) - 1056102..1056740 (-) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  D2E16_RS05040 (D2E16_05165) - 1056875..1057078 (-) 204 WP_014637864.1 DUF4649 family protein -
  D2E16_RS05045 (D2E16_05170) - 1057080..1057424 (-) 345 WP_044690782.1 DUF1831 domain-containing protein -
  D2E16_RS05050 (D2E16_05175) - 1057426..1058541 (-) 1116 WP_172013068.1 cysteine desulfurase family protein -
  D2E16_RS05055 (D2E16_05180) - 1058552..1059529 (-) 978 WP_024385769.1 ribose-phosphate diphosphokinase -
  D2E16_RS05060 (D2E16_05185) - 1059673..1060239 (-) 567 WP_015646779.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25766.97 Da        Isoelectric Point: 7.4771

>NTDB_id=274180 D2E16_RS05025 WP_002935253.1 1054729..1055409(+) (radC) [Streptococcus suis strain YSJ17]
MYQIEFKEEAILPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=274180 D2E16_RS05025 WP_002935253.1 1054729..1055409(+) (radC) [Streptococcus suis strain YSJ17]
ATGTATCAAATTGAATTTAAAGAAGAGGCCATTTTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACCGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGCATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTGTTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(108-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83VP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.333

99.558

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482