Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   D2E16_RS00370 Genome accession   NZ_CP032064
Coordinates   73682..74272 (+) Length   196 a.a.
NCBI ID   WP_136648117.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68682..79272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS00360 (D2E16_00380) - 70065..71588 (+) 1524 WP_105127847.1 quinol oxidase -
  D2E16_RS00365 (D2E16_00385) hexB 71706..73643 (+) 1938 WP_192369290.1 DNA mismatch repair endonuclease MutL Machinery gene
  D2E16_RS00370 (D2E16_00390) ruvA 73682..74272 (+) 591 WP_136648117.1 Holliday junction branch migration protein RuvA Machinery gene
  D2E16_RS00375 (D2E16_00395) - 74546..75115 (+) 570 WP_192369291.1 DNA-3-methyladenine glycosylase I -
  D2E16_RS00380 (D2E16_00400) cinA 75152..76333 (+) 1182 WP_192369292.1 competence/damage-inducible protein A Machinery gene
  D2E16_RS00385 (D2E16_00405) recA 76385..77536 (+) 1152 WP_192369293.1 recombinase RecA Machinery gene
  D2E16_RS00390 (D2E16_00410) spx 77695..78093 (+) 399 WP_105108276.1 transcriptional regulator Spx -
  D2E16_RS00395 (D2E16_00415) - 78199..78465 (+) 267 WP_105108277.1 IreB family regulatory phosphoprotein -
  D2E16_RS00400 (D2E16_00420) ruvX 78465..78884 (+) 420 WP_192369294.1 Holliday junction resolvase RuvX -
  D2E16_RS00405 (D2E16_00425) - 78896..79213 (+) 318 WP_192369295.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21685.05 Da        Isoelectric Point: 5.0653

>NTDB_id=274138 D2E16_RS00370 WP_136648117.1 73682..74272(+) (ruvA) [Streptococcus suis strain YSJ17]
MYDYIKGVLTKITAKYIVVETYGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQPVAPASENIALDEAMEAME
ALGYRPAELKKIKKFFDGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=274138 D2E16_RS00370 WP_136648117.1 73682..74272(+) (ruvA) [Streptococcus suis strain YSJ17]
ATGTACGACTATATTAAAGGAGTTTTAACAAAAATCACTGCAAAGTATATTGTGGTAGAAACGTATGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTTCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGCCTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTCCAACCAGTAGCACCTGCCAGTGAAAATATTGCCCTCGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTCGACGGTACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCACTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

74.619

100

0.75
  ruvA Streptococcus pneumoniae D39

74.619

100

0.75
  ruvA Streptococcus pneumoniae TIGR4

74.619

100

0.75
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.424

100

0.398