Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MPE_RS00535 Genome accession   NC_008825
Coordinates   114289..114810 (+) Length   173 a.a.
NCBI ID   WP_011827712.1    Uniprot ID   W7W572
Organism   Methylibium petroleiphilum PM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 109289..119810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPE_RS00520 (Mpe_A0107) - 110298..110699 (+) 402 WP_011827708.1 Ig-like domain-containing protein -
  MPE_RS00525 (Mpe_A0108) recQ 110768..112669 (-) 1902 Protein_106 DNA helicase RecQ -
  MPE_RS00530 (Mpe_A0110) - 112718..114100 (-) 1383 WP_148210862.1 chloride channel protein -
  MPE_RS00535 (Mpe_A0111) ssb 114289..114810 (+) 522 WP_011827712.1 single-stranded DNA-binding protein Machinery gene
  MPE_RS00540 (Mpe_A0112) - 114919..116739 (+) 1821 WP_011827713.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  MPE_RS00545 (Mpe_A0113) - 117100..118137 (+) 1038 WP_011827714.1 sulfonate ABC transporter substrate-binding protein -
  MPE_RS00550 (Mpe_A0114) - 118148..119143 (+) 996 WP_011827715.1 aliphatic sulfonate ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18772.85 Da        Isoelectric Point: 5.3932

>NTDB_id=27411 MPE_RS00535 WP_011827712.1 114289..114810(+) (ssb) [Methylibium petroleiphilum PM1]
MASINKVILIGNLGRDPEVRYTPSGSAVCNISLATTRNWKSKDSGDKVEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKDGAEKYTTEIIAEQMQLLGGREGMGGGDDGGGGGYSRGDEGGGEAPQRAARPPQRPAASRQAPAPAPQKS
ATGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=27411 MPE_RS00535 WP_011827712.1 114289..114810(+) (ssb) [Methylibium petroleiphilum PM1]
ATGGCCTCCATCAACAAAGTCATCCTGATCGGCAACCTGGGCCGCGACCCCGAGGTGCGCTACACGCCCAGCGGTTCGGC
GGTGTGCAACATCAGCCTTGCCACCACCCGCAACTGGAAGAGCAAGGACAGCGGCGACAAGGTCGAGGAGACCGAATGGC
ACCGCGTGGTGTTCTACGACCGCCTGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCCGGTCTACGTCGAAGGC
CGCTTGAAGACCCGCAAGTGGCAGGACAAGGACGGCGCCGAGAAGTACACCACCGAGATCATTGCCGAGCAGATGCAGCT
GCTCGGGGGCCGCGAGGGCATGGGTGGCGGTGACGACGGCGGTGGCGGCGGCTATTCCCGGGGTGACGAAGGCGGCGGCG
AGGCCCCGCAGCGCGCGGCGCGCCCGCCGCAGCGACCGGCCGCCTCGCGCCAGGCGCCTGCACCGGCCCCGCAGAAGTCG
GCCACCGGCTTCGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7W572

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

50.562

100

0.52
  ssb Neisseria meningitidis MC58

49.18

100

0.52
  ssb Vibrio cholerae strain A1552

49.171

100

0.514
  ssb Glaesserella parasuis strain SC1401

45.312

100

0.503

Multiple sequence alignment