Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MC81_RS24395 Genome accession   NZ_CP026973
Coordinates   5241262..5241783 (+) Length   173 a.a.
NCBI ID   WP_042795956.1    Uniprot ID   -
Organism   Achromobacter insolitus strain FDAARGOS_88     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5236262..5246783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC81_RS24385 (MC81_24385) uvrA 5236720..5239575 (-) 2856 WP_376785068.1 excinuclease ABC subunit UvrA -
  MC81_RS24390 (MC81_24390) - 5239762..5240979 (+) 1218 WP_042795955.1 MFS transporter -
  MC81_RS24395 (MC81_24395) ssb 5241262..5241783 (+) 522 WP_042795956.1 single-stranded DNA-binding protein Machinery gene
  MC81_RS24400 (MC81_24400) - 5242190..5242495 (+) 306 WP_042795957.1 DUF4148 domain-containing protein -
  MC81_RS24405 (MC81_24405) - 5242582..5242887 (+) 306 WP_042795958.1 DUF4148 domain-containing protein -
  MC81_RS24410 (MC81_24410) - 5243018..5243611 (+) 594 WP_042795959.1 TetR/AcrR family transcriptional regulator -
  MC81_RS24415 (MC81_24415) - 5243684..5244544 (-) 861 WP_042797489.1 cysteine hydrolase -
  MC81_RS24420 (MC81_24420) - 5244787..5245404 (-) 618 WP_042795960.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18671.74 Da        Isoelectric Point: 5.9702

>NTDB_id=274092 MC81_RS24395 WP_042795956.1 5241262..5241783(+) (ssb) [Achromobacter insolitus strain FDAARGOS_88]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGASFGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPAAAPASS
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=274092 MC81_RS24395 WP_042795956.1 5241262..5241783(+) (ssb) [Achromobacter insolitus strain FDAARGOS_88]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGACGCGACCCGGAAGTCCGCTACAGCCCCGAAGGGGCGGC
AATCTGCAATATGTCCATTGCCACCACCTCCACCTGGAAAGACAAGGCTTCGGGCGAACGCCGCGAAGAAACGGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAGTACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTGAAGACGCGCAAGTGGCAAGACAAAGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
AATGCTAGGCGGCCGCGAAGACGGCGGTGGCGGTGGCGCAAGCTTCGGCGGCGGTGGCGGCTACGACGACGCCCCGGCGC
GCCAGCCGCAGCAACGCGCTCCGGCTCAACGCCCGGCCCCGCAGCAGCGTCCGGCGCCCGCAGCGGCTCCGGCCAGCAGC
GGCGCCAACCTGGCGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.098

100

0.572
  ssb Neisseria meningitidis MC58

52.486

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Glaesserella parasuis strain SC1401

50

100

0.538

Multiple sequence alignment