Detailed information NTG0274073

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: LL267_RS05090
• Genome accession: NZ_CP032058
• Coordinates: 1008860..1009540 (+)
• Length: 226 a.a.
• NCBI ID: WP_058221792.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain 267
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1003860..1014540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL267_RS05070 (LL267_0970)	-	1004224..1004739 (+)	516	WP_003131889.1	DUF2127 domain-containing protein	-
LL267_RS05075 (LL267_0971)	-	1004743..1006068 (+)	1326	WP_058221791.1	cell wall metabolism sensor histidine kinase WalK	-
LL267_RS05080 (LL267_0972)	-	1006075..1006731 (+)	657	WP_003131894.1	phosphatase PAP2 family protein	-
LL267_RS05085 (LL267_0973)	glmS	1006912..1008729 (+)	1818	WP_010905678.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
LL267_RS05090 (LL267_0974)	radC	1008860..1009540 (+)	681	WP_058221792.1	DNA repair protein RadC	Machinery gene
LL267_RS05095 (LL267_0975)	-	1009739..1010863 (-)	1125	Protein_974	tyrosine-type recombinase/integrase	-
LL267_RS05100 (LL267_0976)	-	1010989..1011606 (-)	618	WP_058221793.1	SHOCT domain-containing protein	-
LL267_RS05105 (LL267_0977)	-	1011647..1011847 (-)	201	WP_058221794.1	hypothetical protein	-
LL267_RS05110 (LL267_0978)	-	1011859..1012422 (-)	564	WP_058221795.1	hypothetical protein	-
LL267_RS05115 (LL267_0979)	-	1012451..1012798 (-)	348	WP_058221798.1	XRE family transcriptional regulator	-
LL267_RS05120 (LL267_0980)	-	1013087..1013317 (+)	231	WP_058221796.1	hypothetical protein	-
LL267_RS05125 (LL267_0981)	-	1013331..1013666 (+)	336	WP_058221797.1	DUF771 domain-containing protein	-
LL267_RS05130 (LL267_0982)	-	1013804..1014037 (+)	234	WP_011834776.1	hypothetical protein	-
LL267_RS05135 (LL267_0983)	-	1013992..1014270 (-)	279	WP_011834777.1	hypothetical protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25816.69 Da
• Isoelectric Point: 8.4375

>NTDB_id=274073 LL267_RS05090 WP_058221792.1 1008860..1009540(+) (radC) [Lactococcus lactis subsp. lactis strain 267]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKKKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide

• Length: 681 bp

>NTDB_id=274073 LL267_RS05090 WP_058221792.1 1008860..1009540(+) (radC) [Lactococcus lactis subsp. lactis strain 267]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTAAAACCAAGTCAAGCTGA
TAAAATATTTACTACCAAAAAAAAAAAATCTTGCGAGGATGTGGGGATCAATTTTATTGATCATATTATTGTAGGGGCTG
GTAATTATTTTAGCTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (5-80)

• RadC-like JAB domain (RadC) (115-223)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus pneumoniae TIGR4	45.946	98.23	0.451
radC	Streptococcus pneumoniae R6	45.946	98.23	0.451
radC	Streptococcus pneumoniae D39	45.946	98.23	0.451
radC	Streptococcus gordonii str. Challis substr. CH1	44.595	98.23	0.438
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	41.256	98.673	0.407