Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | RK73_RS13190 | Genome accession | NZ_CP026960 |
| Coordinates | 2527229..2527732 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain FDAARGOS_15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2527229..2548508 | 2527229..2527732 | within | 0 |
Gene organization within MGE regions
Location: 2527229..2548508
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK73_RS13190 (RK73_13190) | ssbA | 2527229..2527732 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| RK73_RS13195 (RK73_13195) | rpsR | 2527784..2528026 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| RK73_RS13200 (RK73_13200) | - | 2528265..2529164 (-) | 900 | WP_001797289.1 | Abi family protein | - |
| RK73_RS13205 (RK73_13205) | - | 2529166..2530380 (-) | 1215 | WP_000270124.1 | tyrosine-type recombinase/integrase | - |
| RK73_RS13210 (RK73_13210) | - | 2530406..2531329 (-) | 924 | WP_050436923.1 | helix-turn-helix domain-containing protein | - |
| RK73_RS13215 (RK73_13215) | - | 2531436..2531636 (+) | 201 | WP_001033058.1 | helix-turn-helix transcriptional regulator | - |
| RK73_RS13220 (RK73_13220) | - | 2531675..2531887 (+) | 213 | WP_033863184.1 | helix-turn-helix domain-containing protein | - |
| RK73_RS13225 (RK73_13225) | - | 2531888..2532160 (+) | 273 | WP_001138301.1 | helix-turn-helix domain-containing protein | - |
| RK73_RS13230 (RK73_13230) | - | 2532172..2532318 (+) | 147 | WP_000784873.1 | hypothetical protein | - |
| RK73_RS13235 (RK73_13235) | tscA | 2532311..2532520 (+) | 210 | WP_001058490.1 | type II toxin-antitoxin system antitoxin TscA | - |
| RK73_RS13240 (RK73_13240) | tscT | 2532523..2532828 (+) | 306 | WP_033863183.1 | type II toxin-antitoxin system toxin TscT | - |
| RK73_RS13245 (RK73_13245) | - | 2532903..2534516 (+) | 1614 | WP_033863178.1 | hypothetical protein | - |
| RK73_RS13250 (RK73_13250) | - | 2534687..2535490 (+) | 804 | WP_033863177.1 | bifunctional DNA primase/polymerase | - |
| RK73_RS14805 | - | 2535621..2535851 (+) | 231 | Protein_2479 | virulence-associated protein E | - |
| RK73_RS13260 (RK73_13260) | - | 2536130..2536492 (+) | 363 | WP_001039168.1 | hypothetical protein | - |
| RK73_RS13265 (RK73_13265) | - | 2536494..2536778 (+) | 285 | WP_033863176.1 | hypothetical protein | - |
| RK73_RS13270 (RK73_13270) | - | 2536775..2537416 (+) | 642 | WP_033863175.1 | pathogenicity island protein | - |
| RK73_RS13275 (RK73_13275) | - | 2537953..2538294 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| RK73_RS13280 (RK73_13280) | - | 2538325..2538978 (+) | 654 | WP_000214171.1 | hypothetical protein | - |
| RK73_RS13285 (RK73_13285) | - | 2539031..2539558 (+) | 528 | WP_033863174.1 | spore coat protein | - |
| RK73_RS13290 (RK73_13290) | - | 2539690..2539902 (+) | 213 | WP_025174984.1 | hypothetical protein | - |
| RK73_RS13295 (RK73_13295) | - | 2539899..2540468 (+) | 570 | WP_001293066.1 | terminase small subunit | - |
| RK73_RS13300 (RK73_13300) | - | 2540897..2541415 (+) | 519 | WP_000624990.1 | hypothetical protein | - |
| RK73_RS13305 (RK73_13305) | - | 2541412..2541840 (+) | 429 | WP_000591858.1 | hypothetical protein | - |
| RK73_RS13310 (RK73_13310) | - | 2541827..2542606 (+) | 780 | WP_000705255.1 | hypothetical protein | - |
| RK73_RS13315 (RK73_13315) | - | 2542843..2543070 (+) | 228 | WP_033863179.1 | hypothetical protein | - |
| RK73_RS14975 | - | 2543142..2543239 (+) | 98 | Protein_2492 | hypothetical protein | - |
| RK73_RS13320 (RK73_13320) | - | 2544122..2545060 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| RK73_RS14810 | - | 2545099..2545800 (-) | 702 | Protein_2494 | tyrosine-type recombinase/integrase | - |
| RK73_RS13335 (RK73_13335) | selX | 2546006..2546617 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| RK73_RS13340 (RK73_13340) | - | 2546986..2547354 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| RK73_RS13345 (RK73_13345) | - | 2547535..2548107 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| RK73_RS13350 (RK73_13350) | - | 2548245..2548508 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=273905 RK73_RS13190 WP_000934799.1 2527229..2527732(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_15]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=273905 RK73_RS13190 WP_000934799.1 2527229..2527732(+) (ssbA) [Staphylococcus aureus strain FDAARGOS_15]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |