Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   YE_RS19260 Genome accession   NC_008800
Coordinates   4191120..4191671 (-) Length   183 a.a.
NCBI ID   WP_005174387.1    Uniprot ID   -
Organism   Yersinia enterocolitica subsp. enterocolitica 8081     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4186120..4196671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YE_RS19240 (YE3840) - 4186646..4188013 (-) 1368 WP_042661540.1 NCS2 family permease -
  YE_RS19245 (YE3841) - 4188489..4189160 (-) 672 WP_011817296.1 glutathione S-transferase family protein -
  YE_RS19250 (YE3842) - 4189426..4189725 (+) 300 WP_004391839.1 helix-turn-helix transcriptional regulator -
  YE_RS19255 (YE3843) - 4189727..4191055 (+) 1329 WP_005174384.1 type II toxin-antitoxin system HipA family toxin -
  YE_RS19260 (YE3844) ssb 4191120..4191671 (-) 552 WP_005174387.1 single-stranded DNA-binding protein SSB1 Machinery gene
  YE_RS19265 (YE3845) uvrA 4192071..4194902 (+) 2832 WP_005174389.1 excinuclease ABC subunit UvrA -
  YE_RS19270 (YE3846) - 4194961..4195314 (-) 354 WP_005165225.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19172.17 Da        Isoelectric Point: 4.9567

>NTDB_id=27371 YE_RS19260 WP_005174387.1 4191120..4191671(-) (ssb) [Yersinia enterocolitica subsp. enterocolitica 8081]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGASQDGGAQGGWGQPQQPQGGNQFSGGQQASRPAQ
SAPAAQPQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=27371 YE_RS19260 WP_005174387.1 4191120..4191671(-) (ssb) [Yersinia enterocolitica subsp. enterocolitica 8081]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGTTGTTCGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
TGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCATCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAACCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAGCAGGCTTCACGGCCGGCTCAG
TCAGCGCCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.743
  ssb Glaesserella parasuis strain SC1401

55.959

100

0.59
  ssb Neisseria meningitidis MC58

46.409

98.907

0.459
  ssb Neisseria gonorrhoeae MS11

45.856

98.907

0.454

Multiple sequence alignment