Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C5F71_RS09150 Genome accession   NZ_CP026881
Coordinates   1911506..1912021 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas sp. LG1D9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1906506..1917021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F71_RS09125 - 1906543..1907652 (-) 1110 WP_104911005.1 DUF3182 family protein -
  C5F71_RS09130 - 1907872..1908855 (-) 984 WP_104911006.1 GlxA family transcriptional regulator -
  C5F71_RS09135 - 1908952..1909500 (+) 549 WP_104911007.1 cysteine hydrolase family protein -
  C5F71_RS09140 tam 1909511..1910272 (-) 762 WP_104911008.1 trans-aconitate 2-methyltransferase -
  C5F71_RS09145 - 1910602..1911426 (+) 825 WP_104911009.1 alpha/beta fold hydrolase -
  C5F71_RS09150 ssb 1911506..1912021 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  C5F71_RS09155 - 1912031..1913425 (-) 1395 WP_029299405.1 MFS transporter -
  C5F71_RS09160 uvrA 1913606..1916440 (+) 2835 WP_029299403.1 excinuclease ABC subunit UvrA -
  C5F71_RS09165 bfr 1916508..1916972 (-) 465 WP_029299402.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=273058 C5F71_RS09150 WP_017849542.1 1911506..1912021(-) (ssb) [Pseudomonas sp. LG1D9]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=273058 C5F71_RS09150 WP_017849542.1 1911506..1912021(-) (ssb) [Pseudomonas sp. LG1D9]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGTATGTCCAACTCGGCGCCGCGTCCACAGC
AGTCGCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCGGCACCGCAGCCGGCCGCT
GACTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48

Multiple sequence alignment