Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VEIS_RS01475 | Genome accession | NC_008786 |
| Coordinates | 333558..334079 (+) | Length | 173 a.a. |
| NCBI ID | WP_011808104.1 | Uniprot ID | A1WEN0 |
| Organism | Verminephrobacter eiseniae EF01-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 328558..339079
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VEIS_RS01460 (Veis_0293) | - | 329415..330413 (-) | 999 | WP_011808101.1 | hydroxymethylglutaryl-CoA lyase | - |
| VEIS_RS01465 (Veis_0294) | - | 330410..331630 (-) | 1221 | WP_011808102.1 | CaiB/BaiF CoA-transferase family protein | - |
| VEIS_RS01470 (Veis_0295) | - | 331954..333144 (+) | 1191 | WP_011808103.1 | MFS transporter | - |
| VEIS_RS01475 (Veis_0296) | ssb | 333558..334079 (+) | 522 | WP_011808104.1 | single-stranded DNA-binding protein | Machinery gene |
| VEIS_RS01480 (Veis_0297) | mnmA | 334157..335269 (-) | 1113 | WP_011808105.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| VEIS_RS01485 (Veis_0298) | - | 335266..336207 (-) | 942 | WP_011808106.1 | LysR family transcriptional regulator | - |
| VEIS_RS01490 (Veis_0299) | - | 336546..337673 (+) | 1128 | WP_011808107.1 | 4-oxalomesaconate tautomerase | - |
| VEIS_RS01495 (Veis_0300) | - | 337707..338720 (+) | 1014 | WP_011808108.1 | tripartite tricarboxylate transporter substrate binding protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 18605.68 Da Isoelectric Point: 6.4913
>NTDB_id=27305 VEIS_RS01475 WP_011808104.1 333558..334079(+) (ssb) [Verminephrobacter eiseniae EF01-2]
MASVNKVIIVGNLGRDPEMRTFPSGGQIANVTVATTDKWKDKQTGEMKEATEWHRVVFRDRLAEIASQYLRKGSQVYLEG
SLRTRKWTDQSGVEKFSTEIHAHTMQMLGSRQGMSGPQGGHDDGGGYDSGGYEQAPRQAAAPARPAAPAAAAPAAPGPRA
ASGFDDMDDDIPF
MASVNKVIIVGNLGRDPEMRTFPSGGQIANVTVATTDKWKDKQTGEMKEATEWHRVVFRDRLAEIASQYLRKGSQVYLEG
SLRTRKWTDQSGVEKFSTEIHAHTMQMLGSRQGMSGPQGGHDDGGGYDSGGYEQAPRQAAAPARPAAPAAAAPAAPGPRA
ASGFDDMDDDIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=27305 VEIS_RS01475 WP_011808104.1 333558..334079(+) (ssb) [Verminephrobacter eiseniae EF01-2]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCTGAAATGCGCACCTTCCCCAGTGGCGGCCA
AATCGCCAATGTCACCGTCGCCACCACCGACAAGTGGAAAGACAAGCAGACCGGTGAAATGAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTTCGCGATCGTCTGGCGGAAATCGCCAGCCAGTACCTGCGCAAAGGCTCGCAGGTGTATCTGGAAGGC
AGTTTGCGCACCCGCAAATGGACCGACCAGAGCGGCGTGGAAAAGTTCAGCACCGAAATCCACGCCCATACCATGCAGAT
GCTCGGCAGCCGCCAGGGCATGAGCGGCCCGCAAGGCGGGCATGACGATGGCGGCGGCTATGACAGCGGCGGCTACGAGC
AGGCGCCGCGCCAAGCGGCAGCACCGGCACGACCTGCTGCACCAGCAGCGGCGGCCCCGGCAGCCCCGGGGCCCCGCGCT
GCGTCGGGCTTTGACGATATGGACGACGATATTCCGTTCTGA
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGACCCTGAAATGCGCACCTTCCCCAGTGGCGGCCA
AATCGCCAATGTCACCGTCGCCACCACCGACAAGTGGAAAGACAAGCAGACCGGTGAAATGAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTTCGCGATCGTCTGGCGGAAATCGCCAGCCAGTACCTGCGCAAAGGCTCGCAGGTGTATCTGGAAGGC
AGTTTGCGCACCCGCAAATGGACCGACCAGAGCGGCGTGGAAAAGTTCAGCACCGAAATCCACGCCCATACCATGCAGAT
GCTCGGCAGCCGCCAGGGCATGAGCGGCCCGCAAGGCGGGCATGACGATGGCGGCGGCTATGACAGCGGCGGCTACGAGC
AGGCGCCGCGCCAAGCGGCAGCACCGGCACGACCTGCTGCACCAGCAGCGGCGGCCCCGGCAGCCCCGGGGCCCCGCGCT
GCGTCGGGCTTTGACGATATGGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.829 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
48.901 |
100 |
0.514 |
| ssb | Neisseria gonorrhoeae MS11 |
43.75 |
100 |
0.445 |
| ssb | Neisseria meningitidis MC58 |
43.75 |
100 |
0.445 |