Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P67_RS12230 Genome accession   NZ_CP026840
Coordinates   2356943..2357479 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain ATCC 9753     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2351943..2362479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P67_RS12210 aphA 2352232..2352945 (+) 714 WP_005026022.1 acid phosphatase AphA -
  C1P67_RS12215 - 2353056..2353472 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P67_RS12220 - 2353476..2353832 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C1P67_RS12225 uvrA 2353867..2356689 (-) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  C1P67_RS12230 ssb 2356943..2357479 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P67_RS12235 - 2357578..2357859 (-) 282 WP_001295689.1 YjcB family protein -
  C1P67_RS12240 pdeC 2358289..2359023 (+) 735 Protein_2349 c-di-GMP phosphodiesterase PdeC -
  C1P67_RS12245 - 2359080..2359777 (+) 698 WP_094106546.1 IS1 family transposase -
  C1P67_RS12250 - 2359855..2360552 (+) 698 WP_134795416.1 IS1-like element IS1SD family transposase -
  C1P67_RS12255 pdeC 2360569..2361048 (+) 480 Protein_2352 c-di-GMP phosphodiesterase PdeC -
  C1P67_RS12260 soxS 2361051..2361374 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P67_RS12265 soxR 2361460..2361924 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272935 C1P67_RS12230 WP_000168305.1 2356943..2357479(+) (ssb) [Shigella dysenteriae strain ATCC 9753]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272935 C1P67_RS12230 WP_000168305.1 2356943..2357479(+) (ssb) [Shigella dysenteriae strain ATCC 9753]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment