Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P56_RS16290 Genome accession   NZ_CP026836
Coordinates   3129427..3129963 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella boydii strain ATCC 49812     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3124427..3134963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P56_RS16270 soxR 3126155..3126619 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  C1P56_RS16275 soxS 3126705..3127028 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P56_RS16280 pdeC 3127031..3128617 (-) 1587 Protein_3184 c-di-GMP phosphodiesterase PdeC -
  C1P56_RS16285 - 3129047..3129328 (+) 282 WP_001295689.1 YjcB family protein -
  C1P56_RS16290 ssb 3129427..3129963 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P56_RS16295 uvrA 3130217..3133039 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C1P56_RS16300 - 3133074..3133430 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C1P56_RS16305 - 3133434..3133850 (-) 417 WP_105458882.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P56_RS16310 aphA 3133961..3134674 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272904 C1P56_RS16290 WP_000168305.1 3129427..3129963(-) (ssb) [Shigella boydii strain ATCC 49812]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272904 C1P56_RS16290 WP_000168305.1 3129427..3129963(-) (ssb) [Shigella boydii strain ATCC 49812]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment