Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C5B83_RS16525 Genome accession   NZ_CP026834
Coordinates   3143505..3144041 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain ATCC 49347     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3138505..3149041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B83_RS16505 aphA 3138794..3139507 (+) 714 WP_005026022.1 acid phosphatase AphA -
  C5B83_RS16510 - 3139618..3140034 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C5B83_RS16515 - 3140038..3140394 (+) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  C5B83_RS16520 uvrA 3140429..3143251 (-) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  C5B83_RS16525 ssb 3143505..3144041 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C5B83_RS16530 - 3144140..3144421 (-) 282 WP_001295689.1 YjcB family protein -
  C5B83_RS16535 pdeC 3144851..3145585 (+) 735 Protein_3191 c-di-GMP phosphodiesterase PdeC -
  C5B83_RS16540 - 3145642..3146339 (+) 698 WP_094106546.1 IS1 family transposase -
  C5B83_RS16545 - 3146417..3147114 (+) 698 WP_134795416.1 IS1-like element IS1SD family transposase -
  C5B83_RS16550 pdeC 3147131..3147610 (+) 480 Protein_3194 c-di-GMP phosphodiesterase PdeC -
  C5B83_RS16555 soxS 3147613..3147936 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C5B83_RS16560 soxR 3148022..3148486 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272894 C5B83_RS16525 WP_000168305.1 3143505..3144041(+) (ssb) [Shigella dysenteriae strain ATCC 49347]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272894 C5B83_RS16525 WP_000168305.1 3143505..3144041(+) (ssb) [Shigella dysenteriae strain ATCC 49347]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment