Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P71_RS01675 Genome accession   NZ_CP026831
Coordinates   92492..93028 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain ATCC 12039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 87492..98028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P71_RS01655 aphA 87781..88493 (+) 713 Protein_80 acid phosphatase AphA -
  C1P71_RS01660 - 88604..89020 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P71_RS01665 - 89024..89380 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C1P71_RS01670 uvrA 89415..92237 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C1P71_RS01675 ssb 92492..93028 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P71_RS01680 - 93127..93408 (-) 282 WP_001295689.1 YjcB family protein -
  C1P71_RS01685 pdeC 93837..95423 (+) 1587 Protein_86 c-di-GMP phosphodiesterase PdeC -
  C1P71_RS01690 soxS 95426..95749 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P71_RS01695 soxR 95835..96299 (+) 465 WP_128879757.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272835 C1P71_RS01675 WP_000168305.1 92492..93028(+) (ssb) [Shigella dysenteriae strain ATCC 12039]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272835 C1P71_RS01675 WP_000168305.1 92492..93028(+) (ssb) [Shigella dysenteriae strain ATCC 12039]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGTGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCACCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment