Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P77_RS22855 Genome accession   NZ_CP026819
Coordinates   4227632..4228168 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain 96-265     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4222632..4233168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P77_RS22820 soxR 4223187..4223651 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  C1P77_RS22825 soxS 4223737..4224060 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P77_RS22830 pdeC 4224063..4224542 (-) 480 Protein_4301 c-di-GMP phosphodiesterase PdeC -
  C1P77_RS22845 pdeC 4226088..4226822 (-) 735 Protein_4304 c-di-GMP phosphodiesterase PdeC -
  C1P77_RS22850 - 4227252..4227533 (+) 282 WP_001295689.1 YjcB family protein -
  C1P77_RS22855 ssb 4227632..4228168 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P77_RS22860 uvrA 4228422..4231244 (+) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  C1P77_RS22865 - 4231279..4231635 (-) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  C1P77_RS22870 - 4231639..4232055 (-) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P77_RS22875 aphA 4232166..4232879 (-) 714 WP_005026022.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272793 C1P77_RS22855 WP_000168305.1 4227632..4228168(-) (ssb) [Shigella dysenteriae strain 96-265]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272793 C1P77_RS22855 WP_000168305.1 4227632..4228168(-) (ssb) [Shigella dysenteriae strain 96-265]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment