Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P76_RS22235 Genome accession   NZ_CP026815
Coordinates   4187826..4188362 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain 93-119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4182826..4193362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P76_RS22215 aphA 4183115..4183828 (+) 714 WP_005026022.1 acid phosphatase AphA -
  C1P76_RS22220 - 4183939..4184355 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P76_RS22225 - 4184359..4184715 (+) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  C1P76_RS22230 uvrA 4184750..4187572 (-) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  C1P76_RS22235 ssb 4187826..4188362 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P76_RS22240 - 4188461..4188742 (-) 282 WP_001295689.1 YjcB family protein -
  C1P76_RS22245 pdeC 4189172..4189906 (+) 735 Protein_4306 c-di-GMP phosphodiesterase PdeC -
  C1P76_RS22250 - 4189963..4190660 (+) 698 WP_094106546.1 IS1 family transposase -
  C1P76_RS22255 - 4190738..4191435 (+) 698 WP_134795416.1 IS1-like element IS1SD family transposase -
  C1P76_RS22260 pdeC 4191452..4191931 (+) 480 Protein_4309 c-di-GMP phosphodiesterase PdeC -
  C1P76_RS22265 soxS 4191934..4192257 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P76_RS22270 soxR 4192343..4192807 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  C1P76_RS28015 - 4193097..4193315 (-) 219 WP_071529412.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272769 C1P76_RS22235 WP_000168305.1 4187826..4188362(+) (ssb) [Shigella dysenteriae strain 93-119]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272769 C1P76_RS22235 WP_000168305.1 4187826..4188362(+) (ssb) [Shigella dysenteriae strain 93-119]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment