Detailed information NTG0027274

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PNAP_RS03810
• Genome accession: NC_008781
• Coordinates: 812031..812882 (+)
• Length: 283 a.a.
• NCBI ID: WP_011800182.1
• Uniprot ID: -
• Organism: Polaromonas naphthalenivorans CJ2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 807031..817882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PNAP_RS03785 (Pnap_0763)	-	807302..807808 (-)	507	WP_408633749.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PNAP_RS03790 (Pnap_0764)	gspG	807843..808292 (-)	450	WP_041376506.1	type II secretion system major pseudopilin GspG	-
PNAP_RS03795 (Pnap_0765)	-	808451..808765 (+)	315	WP_232290748.1	hypothetical protein	-
PNAP_RS03800 (Pnap_0766)	pilB	808992..810728 (+)	1737	WP_011800180.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PNAP_RS03805 (Pnap_0767)	pilC	810814..812031 (+)	1218	WP_011800181.1	type II secretion system F family protein	Machinery gene
PNAP_RS03810 (Pnap_0768)	pilD	812031..812882 (+)	852	WP_011800182.1	A24 family peptidase	Machinery gene
PNAP_RS03815 (Pnap_0769)	coaE	812887..813498 (+)	612	WP_011800183.1	dephospho-CoA kinase	-
PNAP_RS03820 (Pnap_0770)	zapD	813538..814293 (+)	756	WP_011800184.1	cell division protein ZapD	-
PNAP_RS03825 (Pnap_0771)	-	814352..814558 (+)	207	WP_011800185.1	DNA gyrase inhibitor YacG	-
PNAP_RS03830 (Pnap_0772)	-	814636..814896 (+)	261	WP_011800186.1	hypothetical protein	-
PNAP_RS03835 (Pnap_0773)	grxD	814938..815267 (-)	330	WP_011800187.1	Grx4 family monothiol glutaredoxin	-
PNAP_RS03840 (Pnap_0774)	prmC	815423..816274 (-)	852	WP_011800188.1	peptide chain release factor N(5)-glutamine methyltransferase	-
PNAP_RS03845 (Pnap_0775)	prfA	816371..817492 (-)	1122	WP_011800189.1	peptide chain release factor 1	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30708.38 Da
• Isoelectric Point: 6.8433

>NTDB_id=27274 PNAP_RS03810 WP_011800182.1 812031..812882(+) (pilD) [Polaromonas naphthalenivorans CJ2]
MAPDLEPGLVAVLAGILGLLIGSFLNVVIYRVPKIMERQWAQECAELTGAPAEPAEKFNLLIPRSRCSSCGHLIRWYENI
PVFSYLFLRGKCSACGAPYGVRYPLVEAVTGSLFFFCAWRWGWTPTTLVWCGFSAVLLALAMIDWDTTLLPDDMTLPLLW
TGLIAAALQWNPAVSLSAALWGAVAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWPALVPMILMASVIGAII
GIAMKFSSGLREGGYVPFGPFLAGAGFTAMIFGPQSILQFVGL

Nucleotide

• Length: 852 bp

>NTDB_id=27274 PNAP_RS03810 WP_011800182.1 812031..812882(+) (pilD) [Polaromonas naphthalenivorans CJ2]
ATGGCGCCGGATCTGGAGCCGGGACTTGTCGCCGTGCTCGCCGGGATTTTGGGCCTGCTGATCGGCAGTTTCCTGAACGT
CGTCATCTACCGTGTTCCCAAAATAATGGAGCGCCAGTGGGCGCAGGAATGTGCTGAACTGACGGGTGCACCAGCGGAGC
CGGCTGAAAAATTCAACCTGCTGATACCACGTTCGCGGTGTTCCAGTTGCGGCCACCTGATTCGCTGGTATGAAAACATT
CCGGTGTTCAGCTACCTTTTCCTGCGGGGAAAGTGTTCGGCATGCGGCGCGCCCTATGGGGTTCGTTATCCGCTGGTTGA
AGCGGTCACGGGCAGCCTGTTTTTCTTTTGCGCCTGGCGCTGGGGCTGGACGCCGACGACGCTGGTCTGGTGCGGATTTT
CCGCGGTGCTGCTGGCGCTGGCGATGATTGACTGGGACACTACCCTGCTGCCGGACGACATGACCTTGCCCCTGCTGTGG
ACGGGGCTGATTGCGGCGGCATTGCAGTGGAACCCGGCGGTCAGCTTGTCCGCAGCTTTATGGGGCGCGGTGGCCGGTTA
TCTTTCGCTGTGGCTGGTTTACTGGGCTTTCAAGCTGGCAACCGGCAAGGAAGGCATGGGCTACGGCGATTTCAAGCTCT
TTGCCGCGCTGGGCGCCTGGTTTGGCTGGCCTGCGCTGGTGCCCATGATCCTGATGGCTTCGGTGATCGGCGCCATCATC
GGTATCGCGATGAAGTTTTCCAGCGGCCTGCGCGAAGGCGGCTATGTGCCGTTTGGCCCCTTTTTGGCCGGGGCAGGTTT
TACCGCCATGATTTTCGGTCCGCAGTCGATCCTTCAATTTGTCGGGTTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.941	96.113	0.509
pilD	Vibrio cholerae strain A1552	50.909	97.173	0.495
pilD	Neisseria gonorrhoeae MS11	49.057	93.64	0.459
pilD	Acinetobacter baumannii D1279779	46.715	96.82	0.452
pilD	Acinetobacter nosocomialis M2	46.35	96.82	0.449