Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P75_RS16830 Genome accession   NZ_CP026807
Coordinates   3139082..3139618 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain 204/96     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3134082..3144618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P75_RS16810 aphA 3134371..3135084 (+) 714 WP_005026022.1 acid phosphatase AphA -
  C1P75_RS16815 - 3135195..3135611 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P75_RS16820 - 3135615..3135971 (+) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  C1P75_RS16825 uvrA 3136006..3138828 (-) 2823 WP_000357691.1 excinuclease ABC subunit UvrA -
  C1P75_RS16830 ssb 3139082..3139618 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P75_RS16835 - 3139717..3139998 (-) 282 WP_001295689.1 YjcB family protein -
  C1P75_RS16840 pdeC 3140428..3141162 (+) 735 Protein_3255 c-di-GMP phosphodiesterase PdeC -
  C1P75_RS16845 - 3141219..3141916 (+) 698 WP_094106546.1 IS1 family transposase -
  C1P75_RS16850 - 3141994..3142691 (+) 698 WP_134795416.1 IS1-like element IS1SD family transposase -
  C1P75_RS16855 pdeC 3142708..3143187 (+) 480 Protein_3258 c-di-GMP phosphodiesterase PdeC -
  C1P75_RS16860 soxS 3143190..3143513 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P75_RS16865 soxR 3143599..3144063 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=272703 C1P75_RS16830 WP_000168305.1 3139082..3139618(+) (ssb) [Shigella dysenteriae strain 204/96]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=272703 C1P75_RS16830 WP_000168305.1 3139082..3139618(+) (ssb) [Shigella dysenteriae strain 204/96]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment