NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	D1E88_RS07950	Genome accession	NZ_CP031886
Coordinates	1637510..1638196 (-)	Length	228 a.a.
NCBI ID	WP_000692885.1	Uniprot ID	-
Organism	Staphylococcus aureus strain CFSAN082783
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1632510..1643196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1E88_RS07905 (D1E88_08075)	rpmA	1633283..1633567 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
D1E88_RS07910 (D1E88_08080)	-	1633579..1633899 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
D1E88_RS07915 (D1E88_08085)	rplU	1633905..1634213 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
D1E88_RS07920 (D1E88_08090)	mreD	1634449..1634979 (-)	531	WP_001259927.1	rod shape-determining protein MreD	-
D1E88_RS07925 (D1E88_08095)	mreC	1634979..1635821 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
D1E88_RS07930 (D1E88_08100)	-	1636020..1636139 (-)	120	WP_000840600.1	hypothetical protein	-
D1E88_RS07935 (D1E88_08105)	-	1636213..1636686 (-)	474	WP_001236734.1	DUF4930 family protein	-
D1E88_RS07940 (D1E88_08110)	-	1636846..1637043 (+)	198	WP_000025835.1	hypothetical protein	-
D1E88_RS07945 (D1E88_08115)	-	1637158..1637442 (-)	285	WP_000171863.1	hypothetical protein	-
D1E88_RS07950 (D1E88_08120)	ysxA/radC	1637510..1638196 (-)	687	WP_000692885.1	RadC family protein	Machinery gene
D1E88_RS07955 (D1E88_08125)	-	1638193..1638900 (-)	708	WP_000261123.1	prepilin peptidase	-
D1E88_RS07960 (D1E88_08135)	-	1639168..1640439 (-)	1272	WP_001108332.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
D1E88_RS07965 (D1E88_08140)	-	1640452..1643082 (-)	2631	WP_000425356.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25293.20 Da Isoelectric Point: 6.7572

                                >NTDB_id=272701 D1E88_RS07950 WP_000692885.1 1637510..1638196(-) (ysxA/radC) [Staphylococcus aureus strain CFSAN082783]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTIRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=272701 D1E88_RS07950 WP_000692885.1 1637510..1638196(-) (ysxA/radC) [Staphylococcus aureus strain CFSAN082783]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCAGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCATCACAAGAAGATAT

CATAACAACAATAAGATTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0272701