Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C5B79_RS00030 | Genome accession | NZ_CP026784 |
| Coordinates | 4771..5307 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168299.1 | Uniprot ID | Q327X2 |
| Organism | Shigella dysenteriae strain 80-547 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 36..48864 | 4771..5307 | within | 0 |
| IScluster/Tn | 6049..42836 | 4771..5307 | flank | 742 |
Gene organization within MGE regions
Location: 36..48864
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5B79_RS00010 | aphA | 575..773 (+) | 199 | Protein_1 | acid phosphatase AphA | - |
| C5B79_RS00015 | - | 884..1300 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| C5B79_RS00020 | - | 1304..1660 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| C5B79_RS00025 | uvrA | 1695..4517 (-) | 2823 | WP_000357751.1 | excinuclease ABC subunit UvrA | - |
| C5B79_RS00030 | ssb | 4771..5307 (+) | 537 | WP_000168299.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| C5B79_RS00035 | - | 5406..5687 (-) | 282 | WP_005021204.1 | YjcB family protein | - |
| C5B79_RS00045 | - | 6797..7009 (+) | 213 | Protein_8 | EAL domain-containing protein | - |
| C5B79_RS00050 | soxS | 7012..7335 (-) | 324 | WP_000019351.1 | superoxide response transcriptional regulator SoxS | - |
| C5B79_RS00055 | soxR | 7421..7885 (+) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
| C5B79_RS00060 | ghxP | 8432..9781 (+) | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| C5B79_RS00065 | - | 9932..11581 (+) | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| C5B79_RS00075 | - | 12719..12847 (-) | 129 | Protein_14 | integrase | - |
| C5B79_RS00080 | - | 12828..14047 (-) | 1220 | Protein_15 | IS3-like element IS600 family transposase | - |
| C5B79_RS00085 | - | 14115..14489 (+) | 375 | Protein_16 | DUF4942 domain-containing protein | - |
| C5B79_RS00100 | - | 15765..16458 (+) | 694 | Protein_18 | IS1 family transposase | - |
| C5B79_RS00105 | - | 16579..17759 (+) | 1181 | Protein_19 | sugar efflux transporter | - |
| C5B79_RS00115 | - | 17870..18793 (+) | 924 | WP_000535937.1 | carboxylate/amino acid/amine transporter | - |
| C5B79_RS00120 | nlpA | 18797..19615 (-) | 819 | WP_000779403.1 | lipoprotein NlpA | - |
| C5B79_RS00135 | - | 21315..21962 (+) | 648 | Protein_24 | DNA helicase | - |
| C5B79_RS00140 | - | 22007..22897 (-) | 891 | Protein_25 | IS3-like element IS600 family transposase | - |
| C5B79_RS00155 | - | 23744..24154 (-) | 411 | WP_001066413.1 | transposase | - |
| C5B79_RS00160 | tnpB | 24174..24510 (-) | 337 | Protein_28 | IS66 family insertion sequence element accessory protein TnpB | - |
| C5B79_RS00165 | tnpA | 24507..25181 (-) | 675 | WP_005021247.1 | IS66-like element accessory protein TnpA | - |
| C5B79_RS00175 | tnpB | 25557..25904 (+) | 348 | WP_000612546.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| C5B79_RS00180 | - | 25954..27492 (+) | 1539 | WP_000998102.1 | IS66-like element ISEc8 family transposase | - |
| C5B79_RS27615 | - | 27531..27596 (+) | 66 | Protein_32 | hypothetical protein | - |
| C5B79_RS00185 | evgS | 27652..31245 (-) | 3594 | WP_024259479.1 | acid-sensing system histidine kinase EvgS | - |
| C5B79_RS00190 | evgA | 31250..31864 (-) | 615 | WP_000991370.1 | acid-sensing system DNA-binding response regulator EvgA | - |
| C5B79_RS00195 | - | 32238..32935 (+) | 698 | Protein_35 | IS1 family transposase | - |
| C5B79_RS27620 | - | 32946..33008 (-) | 63 | WP_113705808.1 | hypothetical protein | - |
| C5B79_RS00210 | - | 34590..34694 (+) | 105 | Protein_38 | IS3 family transposase | - |
| C5B79_RS00225 | - | 36021..36714 (-) | 694 | Protein_40 | IS1 family transposase | - |
| C5B79_RS26810 | - | 36964..37100 (-) | 137 | Protein_41 | IS5/IS1182 family transposase | - |
| C5B79_RS00240 | - | 37177..37308 (-) | 132 | Protein_42 | IS3 family transposase | - |
| C5B79_RS00245 | yacB | 37366..37494 (-) | 129 | Protein_43 | type II toxin-antitoxin system toxin YacB | - |
| C5B79_RS00250 | - | 37530..38192 (-) | 663 | Protein_44 | IS256 family transposase | - |
| C5B79_RS00260 | tnpA | 39384..39846 (-) | 463 | Protein_46 | IS200/IS605 family transposase | - |
| C5B79_RS00270 | - | 40252..40428 (-) | 177 | WP_000255685.1 | hypothetical protein | - |
| C5B79_RS00275 | - | 40828..41613 (-) | 786 | Protein_48 | IS3 family transposase | - |
| C5B79_RS00280 | - | 41680..42836 (+) | 1157 | Protein_49 | IS3-like element IS600 family transposase | - |
| C5B79_RS00285 | lysS | 42876..43052 (-) | 177 | Protein_50 | lysine--tRNA ligase | - |
| C5B79_RS00290 | dtpC | 43289..44746 (-) | 1458 | WP_000856800.1 | dipeptide/tripeptide permease DtpC | - |
| C5B79_RS00295 | cadA | 44805..46946 (-) | 2142 | Protein_52 | lysine decarboxylase CadA | - |
| C5B79_RS00300 | cadB | 47026..48111 (-) | 1086 | Protein_53 | cadaverine/lysine antiporter | - |
| C5B79_RS00305 | - | 48170..48864 (+) | 695 | WP_087786203.1 | IS1-like element IS1N family transposase | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18991.04 Da Isoelectric Point: 5.2358
>NTDB_id=272489 C5B79_RS00030 WP_000168299.1 4771..5307(+) (ssb) [Shigella dysenteriae strain 80-547]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQLQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQLQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=272489 C5B79_RS00030 WP_000168299.1 4771..5307(+) (ssb) [Shigella dysenteriae strain 80-547]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCTGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCTGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |