Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C1P63_RS22375 | Genome accession | NZ_CP026780 |
| Coordinates | 4077282..4077818 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168299.1 | Uniprot ID | Q327X2 |
| Organism | Shigella dysenteriae strain 53-3937 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4038485..4108734 | 4077282..4077818 | within | 0 |
| IScluster/Tn | 4075846..4076540 | 4077282..4077818 | flank | 742 |
Gene organization within MGE regions
Location: 4038485..4108734
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P63_RS22120 | - | 4038485..4039641 (-) | 1157 | Protein_4194 | IS3-like element IS600 family transposase | - |
| C1P63_RS22125 | - | 4039708..4040493 (+) | 786 | Protein_4195 | IS3 family transposase | - |
| C1P63_RS25740 | - | 4040893..4041069 (+) | 177 | WP_000255685.1 | hypothetical protein | - |
| C1P63_RS22140 | tnpA | 4041475..4041937 (+) | 463 | Protein_4197 | IS200/IS605 family transposase | - |
| C1P63_RS22145 | - | 4042411..4043105 (+) | 695 | WP_134801557.1 | IS1-like element IS1N family transposase | - |
| C1P63_RS22150 | - | 4043129..4043791 (+) | 663 | Protein_4199 | IS256 family transposase | - |
| C1P63_RS22155 | yacB | 4043827..4043955 (+) | 129 | Protein_4200 | type II toxin-antitoxin system toxin YacB | - |
| C1P63_RS22160 | - | 4044013..4044144 (+) | 132 | Protein_4201 | IS3 family transposase | - |
| C1P63_RS26275 | - | 4044221..4044357 (+) | 137 | Protein_4202 | IS5/IS1182 family transposase | - |
| C1P63_RS22175 | - | 4044607..4045300 (+) | 694 | Protein_4203 | IS1 family transposase | - |
| C1P63_RS22180 | - | 4045425..4046122 (+) | 698 | WP_228769498.1 | IS1-like element IS1SD family transposase | - |
| C1P63_RS22190 | - | 4046627..4046731 (-) | 105 | Protein_4205 | IS3 family transposase | - |
| C1P63_RS22195 | - | 4046931..4048159 (+) | 1229 | WP_171764072.1 | IS3-like element IS2 family transposase | - |
| C1P63_RS22200 | - | 4048313..4048375 (+) | 63 | WP_113705808.1 | hypothetical protein | - |
| C1P63_RS22205 | - | 4048386..4049083 (-) | 698 | Protein_4208 | IS1 family transposase | - |
| C1P63_RS22210 | evgA | 4049457..4050070 (+) | 614 | Protein_4209 | acid-sensing system DNA-binding response regulator EvgA | - |
| C1P63_RS22215 | evgS | 4050075..4053668 (+) | 3594 | WP_134806299.1 | acid-sensing system histidine kinase EvgS | - |
| C1P63_RS26600 | - | 4053724..4053789 (-) | 66 | Protein_4211 | hypothetical protein | - |
| C1P63_RS22220 | - | 4053828..4055366 (-) | 1539 | WP_000998102.1 | IS66-like element ISEc8 family transposase | - |
| C1P63_RS22225 | tnpB | 4055416..4055763 (-) | 348 | WP_000612546.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P63_RS22235 | tnpA | 4056139..4056813 (+) | 675 | WP_005021247.1 | IS66-like element accessory protein TnpA | - |
| C1P63_RS22240 | tnpB | 4056810..4057146 (+) | 337 | Protein_4215 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P63_RS22245 | - | 4057166..4057576 (+) | 411 | WP_001066413.1 | transposase | - |
| C1P63_RS22255 | - | 4057708..4058405 (+) | 698 | WP_134795416.1 | IS1-like element IS1SD family transposase | - |
| C1P63_RS22260 | - | 4058423..4059313 (+) | 891 | Protein_4218 | IS3-like element IS600 family transposase | - |
| C1P63_RS22265 | - | 4059358..4060005 (-) | 648 | Protein_4219 | DNA helicase | - |
| C1P63_RS22270 | - | 4060065..4060759 (+) | 695 | WP_134801567.1 | IS1-like element IS1N family transposase | - |
| C1P63_RS22275 | - | 4060871..4061914 (-) | 1044 | WP_000999849.1 | tetratricopeptide repeat protein | - |
| C1P63_RS22285 | - | 4063099..4063227 (-) | 129 | Protein_4223 | integrase | - |
| C1P63_RS22290 | - | 4063208..4064427 (-) | 1220 | Protein_4224 | IS3-like element IS600 family transposase | - |
| C1P63_RS22295 | - | 4064495..4064869 (+) | 375 | Protein_4225 | DUF4942 domain-containing protein | - |
| C1P63_RS22310 | - | 4066145..4066838 (+) | 694 | Protein_4227 | IS1 family transposase | - |
| C1P63_RS22315 | - | 4066959..4068139 (+) | 1181 | Protein_4228 | sugar efflux transporter | - |
| C1P63_RS22325 | - | 4068250..4069173 (+) | 924 | WP_000535937.1 | carboxylate/amino acid/amine transporter | - |
| C1P63_RS22330 | nlpA | 4069177..4069995 (-) | 819 | WP_000779403.1 | lipoprotein NlpA | - |
| C1P63_RS22340 | - | 4071008..4072657 (-) | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| C1P63_RS22345 | ghxP | 4072808..4074157 (-) | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| C1P63_RS22350 | soxR | 4074704..4075168 (-) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
| C1P63_RS22355 | soxS | 4075254..4075577 (+) | 324 | WP_000019351.1 | superoxide response transcriptional regulator SoxS | - |
| C1P63_RS22360 | - | 4075580..4075792 (-) | 213 | Protein_4236 | EAL domain-containing protein | - |
| C1P63_RS22365 | - | 4075846..4076540 (+) | 695 | WP_134801565.1 | IS1-like element IS1N family transposase | - |
| C1P63_RS22370 | - | 4076902..4077183 (+) | 282 | WP_005021204.1 | YjcB family protein | - |
| C1P63_RS22375 | ssb | 4077282..4077818 (-) | 537 | WP_000168299.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| C1P63_RS22380 | uvrA | 4078072..4080893 (+) | 2822 | Protein_4240 | excinuclease ABC subunit UvrA | - |
| C1P63_RS22385 | - | 4080928..4081284 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| C1P63_RS22390 | - | 4081288..4081704 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| C1P63_RS22395 | aphA | 4081815..4082013 (-) | 199 | Protein_4243 | acid phosphatase AphA | - |
| C1P63_RS22405 | aphA | 4082779..4083300 (-) | 522 | Protein_4245 | acid phosphatase AphA | - |
| C1P63_RS22415 | - | 4083528..4084221 (+) | 694 | Protein_4246 | IS1-like element IS1N family transposase | - |
| C1P63_RS22420 | - | 4084490..4084694 (+) | 205 | Protein_4247 | hypothetical protein | - |
| C1P63_RS22430 | tyrB | 4085983..4087176 (-) | 1194 | WP_000486959.1 | aromatic amino acid transaminase | - |
| C1P63_RS22435 | alr | 4087419..4088497 (-) | 1079 | Protein_4250 | alanine racemase | - |
| C1P63_RS22440 | dnaB | 4088550..4089965 (-) | 1416 | WP_000918354.1 | replicative DNA helicase | - |
| C1P63_RS22445 | - | 4090048..4091031 (+) | 984 | WP_000235509.1 | quinone oxidoreductase | - |
| C1P63_RS22450 | pspG | 4091197..4091439 (-) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| C1P63_RS22455 | dusA | 4091573..4092610 (-) | 1038 | WP_011378970.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| C1P63_RS22460 | - | 4092929..4093415 (-) | 487 | Protein_4255 | IS1 family transposase | - |
| C1P63_RS22465 | - | 4093473..4093745 (-) | 273 | Protein_4256 | DUF2713 domain-containing protein | - |
| C1P63_RS22470 | zur | 4094064..4094579 (+) | 516 | WP_000416263.1 | zinc uptake transcriptional repressor Zur | - |
| C1P63_RS22475 | - | 4094621..4094830 (-) | 210 | WP_001030593.1 | CsbD family protein | - |
| C1P63_RS22480 | dinF | 4094946..4096271 (-) | 1326 | WP_011378972.1 | MATE family efflux transporter DinF | - |
| C1P63_RS22485 | lexA | 4096344..4096952 (-) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| C1P63_RS22490 | dgkA | 4097062..4097430 (-) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| C1P63_RS22495 | plsB | 4097601..4100024 (+) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| C1P63_RS22500 | ubiA | 4100179..4101051 (-) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| C1P63_RS22505 | ubiC | 4101064..4101561 (-) | 498 | WP_001297295.1 | chorismate lyase | - |
| C1P63_RS22510 | - | 4101784..4102050 (-) | 267 | Protein_4265 | hypothetical protein | - |
| C1P63_RS22515 | - | 4102108..4102804 (+) | 697 | Protein_4266 | IS1 family transposase | - |
| C1P63_RS22520 | - | 4102820..4103446 (+) | 627 | Protein_4267 | HlyD family secretion protein | - |
| C1P63_RS22525 | - | 4103470..4104030 (-) | 561 | Protein_4268 | LysR substrate-binding domain-containing protein | - |
| C1P63_RS22530 | - | 4104089..4104783 (+) | 695 | WP_134801564.1 | IS1-like element IS1N family transposase | - |
| C1P63_RS22535 | - | 4105083..4105958 (+) | 876 | WP_000470158.1 | LysR family transcriptional regulator | - |
| C1P63_RS22540 | yhjD | 4106007..4107020 (+) | 1014 | WP_134806296.1 | inner membrane protein YhjD | - |
| C1P63_RS22545 | - | 4107412..4108734 (+) | 1323 | WP_001148989.1 | MFS transporter | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18991.04 Da Isoelectric Point: 5.2358
>NTDB_id=272467 C1P63_RS22375 WP_000168299.1 4077282..4077818(-) (ssb) [Shigella dysenteriae strain 53-3937]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQLQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQLQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=272467 C1P63_RS22375 WP_000168299.1 4077282..4077818(-) (ssb) [Shigella dysenteriae strain 53-3937]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCTGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCTGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |