Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1097_RS03850 Genome accession   NZ_CP031873
Coordinates   832588..834609 (+) Length   673 a.a.
NCBI ID   WP_005604119.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 4 str. M62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 827588..839609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1097_RS03825 (D1097_03815) - 828312..828902 (+) 591 WP_005604128.1 hypothetical protein -
  D1097_RS03830 (D1097_03820) - 828906..829724 (+) 819 WP_005604126.1 PHP domain-containing protein -
  D1097_RS03835 (D1097_03825) - 829763..830383 (-) 621 WP_005596976.1 hypothetical protein -
  D1097_RS03840 (D1097_03830) efeB 830394..831587 (-) 1194 WP_005604123.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1097_RS03845 (D1097_03835) efeO 831599..832411 (-) 813 WP_005604121.1 iron uptake system protein EfeO -
  D1097_RS03850 (D1097_03845) uvrB 832588..834609 (+) 2022 WP_005604119.1 excinuclease ABC subunit UvrB Machinery gene
  D1097_RS03855 (D1097_03850) - 834743..835003 (+) 261 WP_005604117.1 antitoxin -
  D1097_RS03860 (D1097_03855) - 835004..835393 (+) 390 WP_005604115.1 type II toxin-antitoxin system VapC family toxin -
  D1097_RS03865 (D1097_03860) - 835529..836752 (+) 1224 WP_005604113.1 ATP-binding protein -
  D1097_RS03870 (D1097_03865) - 836878..839190 (+) 2313 WP_005604111.1 SNF2-related protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76655.44 Da        Isoelectric Point: 5.0986

>NTDB_id=272392 D1097_RS03850 WP_005604119.1 832588..834609(+) (uvrB) [Actinobacillus pleuropneumoniae serovar 4 str. M62]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILARLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVCVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAAVRDKIGQLKAVLLEV

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=272392 D1097_RS03850 WP_005604119.1 832588..834609(+) (uvrB) [Actinobacillus pleuropneumoniae serovar 4 str. M62]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGCTAAATGACGGATTGGCGCATCAAACGTTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCTA
ATGTGATCGCTCAACTCAATCGTCCGGCAATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCCTTCTTCCCAGAAAATGCGGTGGAATACTTTGTCTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAAATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACTATCGTAGTGGCTTCTGTTTCCGCCATTTATGGTTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTGCAAGTGGGGGCGATTATCGACCAACGAGAGATCCTCGCTCGCCTTGCCGAATTGCAATATACCCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTCCCTGCCGAATCGGATGAAATAG
CGTTACGGGTTGAATTGTTTGACGATGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGCTTGGGCAAA
GTACCTCGCTATACCATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAGGAAATCAA
GCAAGAATTGGTGGAACGCCGAGAATACTTCATCAAAGAAAATAAATTGTTGGAAGAACAACGTATTACTCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGCATTGAAAACTATTCACGCTATCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGACTATATGCCGGCGGACGGTTTGCTGATTATTGATGAAAGCCACGTTACCGT
ACCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCAAGAAAAGAAACGCTGGTGCAATACGGGTTCCGCTTGCCTTCAG
CATTGGATAACCGCCCGTTACGTTTTGAAGAATTTGAACGTCTTGCGCCACAGACAATTTATGTTTCGGCAACACCGGGT
AATTATGAATTAGAAAAATCGAATGGTGATGTGGTGGATCAAGTGGTTCGTCCAACGGGATTATTAGACCCGATCATCGA
AGTTCGTCCGGTTGCGACGCAGGTTGATGATGTACTGTCCGAAATTCACAAACGAGTAGCGGTAGATGAACGTGTGCTAA
TTACTACGCTGACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGTGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CCGAACGTTCATTAATTCAGACCATCGGACGTGCAGCTCGAAACCTGAACGGTAAAGCAATTCTTTACGGCGACCGCATT
ACTAACTCTATGCAAAAAGCAATTACCGAAACCGAACGCCGCCGAGAAAAACAACAAAAATACAACGAAGAACACAGTAT
TACTCCGCAAGCCCTCAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTCAAAATCGAAGAAAAATCTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTTAAACAGCTC
GAGCAACAAATGCGAGATTTCGCTAAAGATCTCGAGTTTGAAAAAGCGGCAGCGGTAAGGGATAAAATTGGGCAGTTGAA
GGCGGTGTTGTTGGAGGTTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB interaction domain (UvrB_inter)

(162-252)

UvrB/uvrC motif (UVR)

(634-668)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae R6

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae D39

57.251

98.366

0.563

Multiple sequence alignment