Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   SPUTW3181_RS05935 Genome accession   NC_008750
Coordinates   1300765..1301439 (-) Length   224 a.a.
NCBI ID   WP_011788508.1    Uniprot ID   -
Organism   Shewanella sp. W3-18-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295765..1306439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPUTW3181_RS05920 (Sputw3181_1146) - 1297637..1297885 (+) 249 WP_011788505.1 hypothetical protein -
  SPUTW3181_RS05925 (Sputw3181_1147) - 1297895..1300168 (+) 2274 WP_011788506.1 dynamin family protein -
  SPUTW3181_RS05930 (Sputw3181_1148) - 1300188..1300706 (+) 519 WP_011788507.1 hypothetical protein -
  SPUTW3181_RS05935 (Sputw3181_1149) ideA 1300765..1301439 (-) 675 WP_011788508.1 endonuclease Regulator
  SPUTW3181_RS05940 (Sputw3181_1150) - 1301548..1302150 (-) 603 WP_011788509.1 hypothetical protein -
  SPUTW3181_RS05945 (Sputw3181_1151) - 1302518..1302844 (+) 327 WP_011788510.1 hypothetical protein -
  SPUTW3181_RS05950 (Sputw3181_1152) - 1302860..1303279 (+) 420 WP_000795984.1 single-stranded DNA-binding protein -
  SPUTW3181_RS05955 (Sputw3181_1153) bet 1303359..1304177 (+) 819 WP_011788511.1 phage recombination protein Bet -
  SPUTW3181_RS21975 - 1304260..1304403 (+) 144 WP_169460295.1 hypothetical protein -
  SPUTW3181_RS05960 (Sputw3181_1154) - 1304464..1305480 (+) 1017 WP_011788512.1 YqaJ viral recombinase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26279.36 Da        Isoelectric Point: 7.6623

>NTDB_id=27171 SPUTW3181_RS05935 WP_011788508.1 1300765..1301439(-) (ideA) [Shewanella sp. W3-18-1]
MNRTDFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDAEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGLCDFEVYFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEITRDNRIKALQGNKNHHIK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=27171 SPUTW3181_RS05935 WP_011788508.1 1300765..1301439(-) (ideA) [Shewanella sp. W3-18-1]
ATGAATAGAACTGATTTTTTCGTTACTTTCTTTATAGCGTTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCGTT
CAGTCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGTGAAAAGAATGATGC
TGAGTTTTCTAAAATGGTGTCGGATCTCCATAACCTTGTACCATCTGTAGGAGAACTCAATGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAATGAACCAAGAGCCTATGGTCTATGTGATTTCGAAGTTTATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAATGGGAAATTACACGAGACAATCGAATTAAAG
CCTTACAAGGCAATAAAAACCACCATATAAAATAG

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(41-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

91.48

99.554

0.911
  dns Vibrio parahaemolyticus RIMD 2210633

52.212

100

0.527
  dns Aliivibrio fischeri ES114

50.885

100

0.513
  dns Vibrio cholerae strain A1552

50

99.107

0.496
  dns Campylobacter jejuni RM1221

37.054

100

0.371

Multiple sequence alignment