Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2I25_RS11730 Genome accession   NZ_CP026678
Coordinates   2232656..2233177 (+) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus cereus strain TG1-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2227656..2238177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS11700 (C2I25_11695) spo0J 2228104..2228955 (+) 852 WP_080473669.1 stage 0 sporulation protein Spo0J -
  C2I25_RS11705 (C2I25_11700) yyaC 2228976..2229572 (-) 597 WP_106823397.1 spore protease YyaC -
  C2I25_RS11710 (C2I25_11705) - 2229832..2230713 (+) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  C2I25_RS11715 (C2I25_11710) - 2230734..2230931 (+) 198 WP_000435486.1 DUF951 domain-containing protein -
  C2I25_RS11720 (C2I25_11715) ychF 2231047..2232147 (+) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  C2I25_RS11725 (C2I25_11720) rpsF 2232339..2232629 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  C2I25_RS11730 (C2I25_11725) ssbA 2232656..2233177 (+) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  C2I25_RS11735 (C2I25_11730) rpsR 2233223..2233456 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  C2I25_RS11740 (C2I25_11735) - 2233537..2234472 (+) 936 WP_053563260.1 YybS family protein -
  C2I25_RS11745 (C2I25_11740) - 2234551..2236524 (+) 1974 WP_001113779.1 DHH family phosphoesterase -
  C2I25_RS11750 (C2I25_11745) rplI 2236521..2236967 (+) 447 WP_000864223.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=271658 C2I25_RS11730 WP_002094213.1 2232656..2233177(+) (ssbA) [Bacillus cereus strain TG1-6]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=271658 C2I25_RS11730 WP_002094213.1 2232656..2233177(+) (ssbA) [Bacillus cereus strain TG1-6]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387

Multiple sequence alignment