Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4Q28_RS03840 Genome accession   NZ_CP026676
Coordinates   801736..802272 (+) Length   178 a.a.
NCBI ID   WP_023382618.1    Uniprot ID   A0A964M0Y5
Organism   Pseudomonas sp. SWI6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 796736..807272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q28_RS03825 (C4Q28_03825) bfr 796847..797311 (+) 465 WP_023382621.1 bacterioferritin -
  C4Q28_RS03830 (C4Q28_03830) uvrA 797368..800202 (-) 2835 WP_023382620.1 excinuclease ABC subunit UvrA -
  C4Q28_RS03835 (C4Q28_03835) - 800332..801726 (+) 1395 WP_104881183.1 MFS transporter -
  C4Q28_RS03840 (C4Q28_03840) ssb 801736..802272 (+) 537 WP_023382618.1 single-stranded DNA-binding protein Machinery gene
  C4Q28_RS03845 (C4Q28_03845) - 802392..803783 (-) 1392 WP_027907534.1 PLP-dependent aminotransferase family protein -
  C4Q28_RS03850 (C4Q28_03850) - 804226..805251 (+) 1026 WP_023382616.1 TauD/TfdA family dioxygenase -
  C4Q28_RS03855 (C4Q28_03855) - 805282..806067 (+) 786 WP_023382615.1 TSUP family transporter -
  C4Q28_RS03860 (C4Q28_03860) - 806092..806853 (+) 762 WP_104881184.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19830.95 Da        Isoelectric Point: 5.9312

>NTDB_id=271617 C4Q28_RS03840 WP_023382618.1 801736..802272(+) (ssb) [Pseudomonas sp. SWI6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQGGDPYNQGGGNYGGQQQYNQAPRQQAPRPQQAPQRPAPQQ
PAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=271617 C4Q28_RS03840 WP_023382618.1 801736..802272(+) (ssb) [Pseudomonas sp. SWI6]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGTGAGCAGTGGACCGACAAGCAGTCCGGTCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCTGGTGAATACCTGCGCAAGGGTTCCCAAGTCTACATCGAG
GGCAAGCTGCAGACTCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCGCAGAACCAGCAGCAGGGCGGCGACCCCTACAACCAGGGTGGCGGCAACTACGGTG
GCCAGCAGCAGTACAACCAGGCACCGCGCCAGCAGGCCCCACGTCCGCAACAGGCACCACAGCGTCCCGCGCCGCAGCAG
CCAGCTCCACAGCCAGCCGCCGACTTCGATAGCTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.584
  ssb Neisseria meningitidis MC58

50.829

100

0.517
  ssb Neisseria gonorrhoeae MS11

50.829

100

0.517
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.511

Multiple sequence alignment