Detailed information NTG0271587

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: C4Q26_RS21815
• Genome accession: NZ_CP026674
• Coordinates: 4645159..4645698 (-)
• Length: 179 a.a.
• NCBI ID: WP_104883514.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SWI44
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4640159..4650698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4Q26_RS21765 (C4Q26_21765)	-	4640851..4641951 (+)	1101	WP_158664904.1	putative phage abortive infection protein	-
C4Q26_RS21770 (C4Q26_21770)	-	4642019..4642159 (-)	141	WP_256583293.1	hypothetical protein	-
C4Q26_RS21775 (C4Q26_21775)	-	4642345..4642524 (+)	180	WP_027908123.1	hypothetical protein	-
C4Q26_RS21780 (C4Q26_21780)	-	4642598..4642894 (+)	297	WP_027907851.1	hypothetical protein	-
C4Q26_RS21790 (C4Q26_21790)	-	4643261..4643674 (-)	414	WP_104883510.1	hypothetical protein	-
C4Q26_RS21795 (C4Q26_21795)	-	4643873..4644271 (+)	399	WP_104883511.1	hypothetical protein	-
C4Q26_RS21800 (C4Q26_21800)	-	4644287..4644598 (-)	312	WP_104883512.1	hypothetical protein	-
C4Q26_RS21805 (C4Q26_21805)	-	4644573..4644920 (-)	348	WP_104883513.1	hypothetical protein	-
C4Q26_RS21810 (C4Q26_21810)	-	4644962..4645156 (-)	195	WP_060507212.1	hypothetical protein	-
C4Q26_RS21815 (C4Q26_21815)	ssb	4645159..4645698 (-)	540	WP_104883514.1	single-stranded DNA-binding protein	Machinery gene
C4Q26_RS21820 (C4Q26_21820)	-	4645707..4646378 (-)	672	WP_104883515.1	3'-5' exonuclease	-
C4Q26_RS21825 (C4Q26_21825)	-	4646375..4647241 (-)	867	WP_104883516.1	ATP-binding protein	-
C4Q26_RS28145	-	4647252..4647398 (-)	147	WP_177429842.1	hypothetical protein	-
C4Q26_RS21830 (C4Q26_21830)	-	4647516..4647731 (-)	216	WP_104883517.1	hypothetical protein	-
C4Q26_RS21835 (C4Q26_21835)	-	4647728..4647958 (-)	231	WP_104881534.1	hypothetical protein	-
C4Q26_RS21840 (C4Q26_21840)	-	4647955..4648209 (-)	255	WP_027907149.1	hypothetical protein	-
C4Q26_RS21850 (C4Q26_21850)	-	4648636..4648932 (-)	297	WP_104883519.1	hypothetical protein	-
C4Q26_RS21855 (C4Q26_21855)	bamE	4649653..4649961 (-)	309	WP_104883520.1	outer membrane protein assembly factor BamE	-
C4Q26_RS21860 (C4Q26_21860)	-	4650018..4650254 (-)	237	WP_104883521.1	hypothetical protein	-

Sequence

Protein

• Length: 179 a.a.
• Molecular weight: 20266.36 Da
• Isoelectric Point: 6.9591

>NTDB_id=271587 C4Q26_RS21815 WP_104883514.1 4645159..4645698(-) (ssb) [Pseudomonas sp. SWI44]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEAWTDKQTDQKVEKTEWHRVVLFGKVAEIAGEYLCKGSQCYIE
GKLKTREWEKDGIKRYSTEVHVDINGTLQLLGGRPDNQGGGQQQQQRQPQQQRQQRQQPRQQNNYNQNDNYGHQNQQSAP
PDNFDDDIPFAPLHHLVGA

Nucleotide

• Length: 540 bp

>NTDB_id=271587 C4Q26_RS21815 WP_104883514.1 4645159..4645698(-) (ssb) [Pseudomonas sp. SWI44]
ATGGCCCGCGGCGTAAACAAAGTCATCCTGGTCGGCACCTGTGGCCAGGACCCAGAGGTCCGCTACCTGCCCAATGGCAA
CGCGGTCACCAACCTAAGCCTGGCCACCAGCGAGGCCTGGACCGATAAGCAGACAGACCAGAAGGTCGAGAAGACCGAAT
GGCACCGGGTGGTGCTGTTTGGCAAGGTCGCAGAGATCGCTGGCGAGTATCTGTGCAAAGGGTCGCAGTGCTACATCGAA
GGCAAGCTCAAGACCCGTGAATGGGAAAAGGACGGCATCAAGCGGTACAGCACCGAGGTTCACGTTGACATCAACGGCAC
CCTCCAGCTGCTGGGCGGCCGGCCGGATAACCAGGGCGGTGGCCAGCAGCAACAACAGCGGCAGCCTCAACAGCAGCGGC
AACAGCGCCAGCAGCCTCGGCAGCAGAACAACTACAACCAAAATGACAACTACGGGCATCAGAACCAGCAGTCGGCGCCG
CCGGACAACTTCGACGACGACATACCGTTCGCGCCCCTCCACCACCTGGTAGGTGCATAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (5-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	56.111	100	0.564
ssb	Glaesserella parasuis strain SC1401	47.312	100	0.492
ssb	Neisseria meningitidis MC58	43.182	98.324	0.425
ssb	Neisseria gonorrhoeae MS11	43.182	98.324	0.425