Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4Q26_RS14325 Genome accession   NZ_CP026674
Coordinates   3037320..3037856 (+) Length   178 a.a.
NCBI ID   WP_023382618.1    Uniprot ID   A0A964M0Y5
Organism   Pseudomonas sp. SWI44     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3032320..3042856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4Q26_RS14310 (C4Q26_14310) bfr 3032431..3032895 (+) 465 WP_023382621.1 bacterioferritin -
  C4Q26_RS14315 (C4Q26_14315) uvrA 3032952..3035786 (-) 2835 WP_023382620.1 excinuclease ABC subunit UvrA -
  C4Q26_RS14320 (C4Q26_14320) - 3035916..3037310 (+) 1395 WP_023382619.1 MFS transporter -
  C4Q26_RS14325 (C4Q26_14325) ssb 3037320..3037856 (+) 537 WP_023382618.1 single-stranded DNA-binding protein Machinery gene
  C4Q26_RS28800 (C4Q26_14335) - 3038330..3038584 (+) 255 WP_104883196.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  C4Q26_RS14340 (C4Q26_14340) - 3038687..3039118 (-) 432 WP_104883197.1 flagella synthesis protein FlgN -
  C4Q26_RS14345 (C4Q26_14345) - 3039158..3039355 (-) 198 WP_104883198.1 flagellar biosynthesis anti-sigma factor FlgM -
  C4Q26_RS14350 (C4Q26_14350) flgA 3039542..3040228 (-) 687 WP_104883199.1 flagellar basal body P-ring formation chaperone FlgA -
  C4Q26_RS14355 (C4Q26_14355) flgB 3040391..3040804 (+) 414 WP_104883200.1 flagellar basal body rod protein FlgB -
  C4Q26_RS14360 (C4Q26_14360) flgC 3040819..3041226 (+) 408 WP_104883201.1 flagellar basal body rod protein FlgC -
  C4Q26_RS14365 (C4Q26_14365) - 3041229..3041906 (+) 678 WP_104883202.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19830.95 Da        Isoelectric Point: 5.9312

>NTDB_id=271579 C4Q26_RS14325 WP_023382618.1 3037320..3037856(+) (ssb) [Pseudomonas sp. SWI44]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQNQQQGGDPYNQGGGNYGGQQQYNQAPRQQAPRPQQAPQRPAPQQ
PAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=271579 C4Q26_RS14325 WP_023382618.1 3037320..3037856(+) (ssb) [Pseudomonas sp. SWI44]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGTCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGTGAGCAGTGGACCGACAAGCAGTCCGGTCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCTGGTGAATACCTGCGCAAGGGTTCCCAAGTCTACATCGAG
GGCAAGCTGCAGACTCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGCCGTCCGCAGAACCAGCAGCAGGGCGGCGACCCCTACAACCAGGGTGGCGGCAACTACGGTG
GCCAGCAGCAGTACAACCAGGCACCGCGCCAGCAGGCCCCACGTCCGCAACAGGCACCACAGCGTCCCGCGCCGCAGCAG
CCAGCTCCACAGCCAGCCGCCGACTTCGATAGCTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.584
  ssb Neisseria meningitidis MC58

50.829

100

0.517
  ssb Neisseria gonorrhoeae MS11

50.829

100

0.517
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.511

Multiple sequence alignment