Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   D0819_RS09780 Genome accession   NZ_CP031784
Coordinates   1848062..1848757 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain HMNig-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843062..1853757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS09755 (D0819_09775) minD 1843998..1844804 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  D0819_RS09760 (D0819_09780) minC 1844806..1845486 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  D0819_RS09765 (D0819_09785) mreD 1845539..1846057 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  D0819_RS09770 (D0819_09790) mreC 1846054..1846926 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  D0819_RS09775 (D0819_09795) mreB 1846957..1847970 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  D0819_RS09780 (D0819_09800) ysxA/radC 1848062..1848757 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  D0819_RS09785 (D0819_09805) maf 1848794..1849363 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  D0819_RS09790 (D0819_09810) spoIIB 1849516..1850514 (-) 999 WP_153256949.1 stage II sporulation protein SpoIIB -
  D0819_RS09795 (D0819_09815) comC 1850648..1851394 (-) 747 WP_080332541.1 A24 family peptidase Machinery gene
  D0819_RS09800 (D0819_09820) folC 1851536..1852828 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=271283 D0819_RS09780 WP_003246034.1 1848062..1848757(-) (ysxA/radC) [Bacillus subtilis strain HMNig-2]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=271283 D0819_RS09780 WP_003246034.1 1848062..1848757(-) (ysxA/radC) [Bacillus subtilis strain HMNig-2]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCACCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424